View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_51 (Length: 238)
Name: NF8952_low_51
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_51 |
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| [»] scaffold0206 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 54766136 - 54766346
Alignment:
| Q |
13 |
taattctacgtggagacaatagagaaaatcagattttgaacatcattatcaataatgattgcaaactaactacacaaattggacctaagtgnnnnnnntt |
112 |
Q |
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|||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
54766136 |
taattctacgtggagacaatagagaaaaccaaattttaaacatcattatcaataataattgcaaactaactacacaaattggacctaagtgaaaaaaatt |
54766235 |
T |
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| Q |
113 |
cgcccgaaccaatgaatttcaaccaagatgcattgtcaaatttaaattgtcgatcaataattattatatttatcatgtatttcgtctaaaataggactat |
212 |
Q |
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||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
54766236 |
cgcccgaaccaatgaatttcaaccagggtgcactgtcaaatttaaattgtcgatcaataattgttatgtttatcatgtatttcgtctaaaataggactat |
54766335 |
T |
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| Q |
213 |
gtgaattattt |
223 |
Q |
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||||||||||| |
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| T |
54766336 |
gtgaattattt |
54766346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 1078499 - 1078705
Alignment:
| Q |
13 |
taattctacgtggagacaatagagaaaatcagattttgaacatcattatcaataatgattgcaaactaactacacaaattggacctaagtgnnnnnnntt |
112 |
Q |
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|||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
1078499 |
taattctatgtggagacaatagagaaaaccaaattttgaacatcat-atcaataatgattgcaaactaaatacacaaattggacctaagtgaaaaaaatt |
1078597 |
T |
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| Q |
113 |
cgcccgaaccaatgaatttcaaccaagatgcattgtcaaatttaaattgtcgatcaataattattatatttatcatgtatttcgtctaaaataggactat |
212 |
Q |
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| T |
1078598 |
cgcccgaaccaatgaatttcaacca---tgcactgtcaaatttaaattgtcgatcaataattgttatgtttataatgtatttcgtctaaaataggactat |
1078694 |
T |
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| Q |
213 |
gtgaattattt |
223 |
Q |
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||||||||||| |
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| T |
1078695 |
gtgaattattt |
1078705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 212
Target Start/End: Original strand, 5602506 - 5602644
Alignment:
| Q |
73 |
gcaaactaactacacaaattggacctaagtgnnnnnnnttcgcccgaaccaatgaatttcaaccaagatgcattgtcaaatttaaattgtcgatcaataa |
172 |
Q |
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||||| ||||||||||||||||||| ||||| ||| ||| || ||||||||| | ||||||||||| | | |||||| || || || ||||| |
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| T |
5602506 |
gcaaattaactacacaaattggaccaaagtggaataacttctcccaaatcaatgaattccgaccaagatgcactatgtgatttaattt-tctattaataa |
5602604 |
T |
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| Q |
173 |
ttattatatttatcatgtatttcgtctaaaataggactat |
212 |
Q |
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| T |
5602605 |
ttgttatgtttgtcatgtatttcgtataaaataggactat |
5602644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 10288 - 10215
Alignment:
| Q |
150 |
aaatttaaattgtcgatcaataattattatatttatcatgtatttcgtctaaaataggactatgtgaattattt |
223 |
Q |
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||||||||||| |||||| |||||| |||| ||| |||| ||||||||||||||| | ||||||||||| |||| |
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| T |
10288 |
aaatttaaattttcgatcgataattgttatgtttgtcatatatttcgtctaaaattgaactatgtgaatcattt |
10215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 13044394 - 13044436
Alignment:
| Q |
141 |
tgcattgtcaaatttaaattgtcgatcaataattattatattt |
183 |
Q |
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| T |
13044394 |
tgcattgtcaaatttaaattttcgatcaataatggttatattt |
13044436 |
T |
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