View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8952_low_54 (Length: 233)

Name: NF8952_low_54
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8952_low_54
NF8952_low_54
[»] chr8 (3 HSPs)
chr8 (35-215)||(4177829-4178008)
chr8 (119-209)||(7220342-7220434)
chr8 (132-195)||(13908750-13908814)
[»] chr4 (3 HSPs)
chr4 (120-215)||(19891266-19891362)
chr4 (118-195)||(19718036-19718114)
chr4 (143-209)||(55248494-55248560)
[»] chr7 (3 HSPs)
chr7 (120-216)||(25438182-25438279)
chr7 (158-211)||(34983643-34983696)
chr7 (140-209)||(21421115-21421184)
[»] scaffold0572 (1 HSPs)
scaffold0572 (143-214)||(7926-7997)
[»] chr1 (1 HSPs)
chr1 (143-214)||(41406389-41406460)
[»] chr6 (2 HSPs)
chr6 (152-215)||(20972140-20972203)
chr6 (120-216)||(32053604-32053701)
[»] chr2 (1 HSPs)
chr2 (152-214)||(23923709-23923771)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 4177829 - 4178008
Alignment:
Q  35 atgataatgttgatcccccttgtattttgcatggtctggatttgtgttggtcgactggttgtcgacgggttatgttattccgctggttcatgatccactt 134  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||    
T  4177829 atgataatattgatcccccttgtattttgcatggtctggatttgtgttggtcgactggatgttgatgggttatgttattcagctggttcatgatccactt 4177928  T
Q  135 aatgttttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcata 215  Q
    |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4177929 aatg-tttcacaaatttggtaatttaattagcttgattaagaagctcttgagtcaagattgaattgttgatttatatcata 4178008  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 7220342 - 7220434
Alignment:
Q  119 ggttcatgatccacttaatgt-tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtc-aagattgaattgttgatttgt 209  Q
    |||||| |||||||||||| | |||||||  || ||||| |||| |||||| ||||||||||||||||||| |||||||||||||||||||||    
T  7220342 ggttcacgatccacttaatatgtttcacaggtttggtaacttgagtagcttaattaagaagctcttgagtctaagattgaattgttgatttgt 7220434  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 195
Target Start/End: Complemental strand, 13908814 - 13908750
Alignment:
Q  132 cttaatgt-tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattg 195  Q
    |||||||| ||||| | ||| ||||| | |||||| | |||||||||||||||||||||||||||    
T  13908814 cttaatgtgtttcatagatttggtaactggattagttggattaagaagctcttgagtcaagattg 13908750  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 19891266 - 19891362
Alignment:
Q  120 gttcatgatccacttaatgt-tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcata 215  Q
    ||||| ||||||||||||   ||||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||    
T  19891266 gttcaggatccacttaatacgtttcacatatttggtaacttgattagcttaattaagaagctcttgagtcaagattggattgttggtttgtgtcata 19891362  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 195
Target Start/End: Original strand, 19718036 - 19718114
Alignment:
Q  118 tggttcatgatccacttaatgt-tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattg 195  Q
    ||||||| |||||||||||| | ||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  19718036 tggttcaggatccacttaatatatttcacagatttggtaacttgattagcttaattaagaagctcttgagtcaagattg 19718114  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 55248560 - 55248494
Alignment:
Q  143 cacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgt 209  Q
    |||||||| | ||| ||||||||||| ||||| |||||||||||||| ||||| |||||||||||||    
T  55248560 cacaaattggataacttgattagcttaattaataagctcttgagtcatgattggattgttgatttgt 55248494  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 216
Target Start/End: Original strand, 25438182 - 25438279
Alignment:
Q  120 gttcatgatccacttaatgt-tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcatat 216  Q
    ||||| |||| ||||||| | |||||||||||  |||| ||||||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||||    
T  25438182 gttcaggatctacttaatatgtttcacaaatttagtaacttgattagcttaattaagaagctcttgagtcaggattggattgttgctttgtgtcatat 25438279  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Original strand, 34983643 - 34983696
Alignment:
Q  158 ttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtat 211  Q
    ||||||||||||||||||||||||||||||||| |||| || |||| |||||||    
T  34983643 ttgattagcttgattaagaagctcttgagtcaatattgcatcgttggtttgtat 34983696  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 21421184 - 21421115
Alignment:
Q  140 tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgt 209  Q
    ||||||| ||| ||||| ||||||||||| |||||||||  ||| || |||||||| |||||||||||||    
T  21421184 tttcacatatttggtaacttgattagcttaattaagaagtcctttagccaagattggattgttgatttgt 21421115  T

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Target: scaffold0572 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 7997 - 7926
Alignment:
Q  143 cacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcat 214  Q
    |||| ||| ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  7997 cacagatttggtaacttgattatcttaattaagaagctcttgagtcaagattggattgttgatttgtgtcat 7926  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 214
Target Start/End: Complemental strand, 41406460 - 41406389
Alignment:
Q  143 cacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcat 214  Q
    |||| ||| ||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||||||| ||||    
T  41406460 cacagatttggtaacttgattatcttaattaagaagctcttgagtcaagattggattgttgatttgtgtcat 41406389  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 20972203 - 20972140
Alignment:
Q  152 ggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcata 215  Q
    ||||| ||||||| ||| |||||||||||||||||| ||||||| ||||||||||||| |||||    
T  20972203 ggtaacttgattatcttaattaagaagctcttgagttaagattggattgttgatttgtgtcata 20972140  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 32053701 - 32053604
Alignment:
Q  120 gttcatgatccacttaatgt-tttcacaaattcggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcatat 216  Q
    ||||||| |||||||||| | |||||| |||| |  || ||||||||||| ||||||||||||| |||||| ||||| |||| |||||||| ||||||    
T  32053701 gttcatgttccacttaatatgtttcactaatttgacaacttgattagcttaattaagaagctctagagtcacgattggattgctgatttgtgtcatat 32053604  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 23923771 - 23923709
Alignment:
Q  152 ggtaatttgattagcttgattaagaagctcttgagtcaagattgaattgttgatttgtatcat 214  Q
    ||||| ||||||| ||| ||||||||| |||||||||||||||| ||||||||||||| ||||    
T  23923771 ggtaacttgattatcttaattaagaagatcttgagtcaagattggattgttgatttgtgtcat 23923709  T

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