View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8952_low_6 (Length: 651)
Name: NF8952_low_6
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 16 - 644
Target Start/End: Original strand, 45793097 - 45793720
Alignment:
| Q |
16 |
gtattttcaaagaataatagactgcgaagtgacctaataaacctttaatatgaatagtttgtacaagtgaaaactatgccatcttttcatcatatgctta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45793097 |
gtattttcaaagaataatagactgcgaagtgacctaataaacctttaatatgaatagtttgtacaagtgaaaactatgccatcttttcatcatatgctta |
45793196 |
T |
|
| Q |
116 |
atgctttgaatttcattgatctacattatttcaacatttcattaactgtgnnnnnnnnaacgcaatgatgatttggaccttgttctccaaatttaatatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45793197 |
atgctttgaatttcattgatctacattatttcaacatttcattaactgtgttttttttaacgcaatgatgatttggaccttgttctccaaatttaatatg |
45793296 |
T |
|
| Q |
216 |
agccgccaatatgacagtggtttgtgggcggcaattggaagcatggaccaaatgatcatatgggatgtacagcactacttagctcgaagcatttgtgcgc |
315 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
45793297 |
agccgccagtatgacagtggttcgtgggcggcaattggaagcatggaccaaatgatcatatgggatgtacagcactacttagctcgaagcacttgtacgc |
45793396 |
T |
|
| Q |
316 |
acgaggtttgttggaatttcactttgtgcaagtgacatacttatgcattagagactgaatgaactctgcaattactatacttttatttggaaatgtgaat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45793397 |
acgaggtttgttggaatttcactttgtgcaagtgacatacttatgcattagagactgaatgaactctgcaattactatacttttatttggaaatgtgaat |
45793496 |
T |
|
| Q |
416 |
tttcttttatatgtctgatgagtgaaattttccatcgtgggcagtacggagcgacatgtttgacatggcttggcacatcatgtgtagctactggatctaa |
515 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45793497 |
tttcttttatatgtctgatgagtgaaaatttccatcgtgggcagtacggagcgacatgtttgacatggcttggcacatcatgtgtagctactggatctaa |
45793596 |
T |
|
| Q |
516 |
tgatggagttgtgagattatgggatagtcggtctggtgaatgtgtaagaacattcagttcagagggcactctgaacccattcaatctctttctttgtctg |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45793597 |
tgatggagttgtgagattatgggatagtcgatctggtgaatgtgtaagaaca-----ttcagagggcactctgaacccattcaatctctttctttgtctg |
45793691 |
T |
|
| Q |
616 |
caaatcgtaattacattgtctctgcttct |
644 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |
|
|
| T |
45793692 |
caaatcgtgattacattgtctcggcttct |
45793720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 225 - 380
Target Start/End: Complemental strand, 43817439 - 43817284
Alignment:
| Q |
225 |
tatgacagtggtttgtgggcggcaattggaagcatggaccaaatgatcatatgggatgtacagcactacttagctcgaagcatttgtgcgcacgaggttt |
324 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||||| |||||| ||| ||||||||| |||||| |||||| ||||||||||||| ||| ||||||| |
|
|
| T |
43817439 |
tatgacagtggttcctgggctgcaattggaggcatggataaaatgaccatctgggatgtagagcactccttagcccgaagcatttgtgagcatgaggttt |
43817340 |
T |
|
| Q |
325 |
gttggaatttcactttgtgcaagtgacatacttatgcattagagactgaatgaact |
380 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43817339 |
gttggaatcttgctttgtgcaagtgacatgcttatgcattagaaactgaatgaact |
43817284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 456 - 621
Target Start/End: Complemental strand, 43816991 - 43816831
Alignment:
| Q |
456 |
gcagtacggagcgacatgtttgacatggcttggcacatcatgtgtagctactggatctaatgatggagttgtgagattatgggatagtcggtctggtgaa |
555 |
Q |
| |
|
|||||| |||| |||||||| || |||||||||||||| | ||| |||||||||||||||||||||| ||||||||||||||| ||||| ||||||||| |
|
|
| T |
43816991 |
gcagtatggagtgacatgttcaacctggcttggcacatcgtatgtggctactggatctaatgatggagctgtgagattatgggacagtcgatctggtgaa |
43816892 |
T |
|
| Q |
556 |
tgtgtaagaacattcagttcagagggcactctgaacccattcaatctctttctttgtctgcaaatc |
621 |
Q |
| |
|
||||| |||||| || ||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
43816891 |
tgtgtcagaaca-----tttagagggcactctgaaagcattcaatctctttctttgtctgctaatc |
43816831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 43817506 - 43817466
Alignment:
| Q |
179 |
aatgatgatttggaccttgttctccaaatttaatatgagcc |
219 |
Q |
| |
|
|||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
43817506 |
aatgatgatttggaccttgtactcctaattaaatatgagcc |
43817466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University