View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8952_low_61 (Length: 217)
Name: NF8952_low_61
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 27692208 - 27692380
Alignment:
| Q |
22 |
ttcatctccttcaagcatatctatcacttcattcattgagggacgatcatctggtttcatttctatgcattttttaatgctatcacaatcatcttcatag |
121 |
Q |
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| T |
27692208 |
ttcatctccttcaagcatatctatcacttcattcattgagggacgatcatctggtttcatttgtatgca--tttcaacgcaatcacaatcatcttcattg |
27692305 |
T |
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| Q |
122 |
caatattattttcctcttctgtgtcattgttggtatctattgtttcctcaaattgatcataaatccatttagcaa |
196 |
Q |
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| T |
27692306 |
caattttcttttcctcctctgtaccattgtttgtatctattgtttcctcaaattgatcataaacccatctagcaa |
27692380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 9255356 - 9255301
Alignment:
| Q |
25 |
atctccttcaagcatatctatcacttcattcattgagggacgatcatctggtttca |
80 |
Q |
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| T |
9255356 |
atctccttcaagcatctctatcactttattcattgagggacgatcacatggtttca |
9255301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 9318615 - 9318563
Alignment:
| Q |
28 |
tccttcaagcatatctatcacttcattcattgagggacgatcatctggtttca |
80 |
Q |
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| T |
9318615 |
tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttca |
9318563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 9319687 - 9319739
Alignment:
| Q |
28 |
tccttcaagcatatctatcacttcattcattgagggacgatcatctggtttca |
80 |
Q |
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| T |
9319687 |
tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttca |
9319739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 9350004 - 9350056
Alignment:
| Q |
28 |
tccttcaagcatatctatcacttcattcattgagggacgatcatctggtttca |
80 |
Q |
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|||||||||||| |||||||||| |||||||| ||||||||| |||||||| |
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| T |
9350004 |
tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttca |
9350056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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