View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8952_low_63 (Length: 214)

Name: NF8952_low_63
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8952_low_63
NF8952_low_63
[»] chr3 (2 HSPs)
chr3 (135-178)||(2411287-2411330)
chr3 (43-76)||(19679249-19679282)
[»] chr7 (1 HSPs)
chr7 (43-78)||(24363519-24363554)
[»] chr5 (1 HSPs)
chr5 (37-71)||(16944907-16944941)
[»] scaffold0393 (1 HSPs)
scaffold0393 (136-176)||(13671-13710)
[»] chr4 (1 HSPs)
chr4 (43-79)||(22796771-22796807)
[»] chr1 (1 HSPs)
chr1 (43-79)||(29045851-29045887)


Alignment Details
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 178
Target Start/End: Complemental strand, 2411330 - 2411287
Alignment:
Q  135 tatgttttacactacgtggtgtatcatagcacccaaaaaactta 178  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  2411330 tatgttttacactacatggtgtatcatagcacccaaaaaactta 2411287  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 19679282 - 19679249
Alignment:
Q  43 tgctagtagataaactcaaataacacaatccaaa 76  Q
    |||||||||||||||||||||||| |||||||||    
T  19679282 tgctagtagataaactcaaataacccaatccaaa 19679249  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 24363554 - 24363519
Alignment:
Q  43 tgctagtagataaactcaaataacacaatccaaaca 78  Q
    ||||||||||||||||||||||| ||||||||||||    
T  24363554 tgctagtagataaactcaaataaaacaatccaaaca 24363519  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 16944941 - 16944907
Alignment:
Q  37 cacatgtgctagtagataaactcaaataacacaat 71  Q
    |||| ||||||||||||||||||||||||||||||    
T  16944941 cacaagtgctagtagataaactcaaataacacaat 16944907  T

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Target: scaffold0393 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 13710 - 13671
Alignment:
Q  136 atgttttacactacgtggtgtatcatagcacccaaaaaact 176  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  13710 atgttttacactacatggtgtatcata-cacccaaaaaact 13671  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 22796771 - 22796807
Alignment:
Q  43 tgctagtagataaactcaaataacacaatccaaacaa 79  Q
    |||||||||||||||||||||||  ||||||||||||    
T  22796771 tgctagtagataaactcaaataaatcaatccaaacaa 22796807  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 29045887 - 29045851
Alignment:
Q  43 tgctagtagataaactcaaataacacaatccaaacaa 79  Q
    |||||||||||||||||||||||  ||||||||||||    
T  29045887 tgctagtagataaactcaaataagtcaatccaaacaa 29045851  T

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