View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8952_low_7 (Length: 646)
Name: NF8952_low_7
Description: NF8952
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8952_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 349 - 553
Target Start/End: Original strand, 15471332 - 15471556
Alignment:
| Q |
349 |
aattcatggtaatttaagctgtgactgggttataggacagttcacatatcatataatgagtgacccgtgtctattttaa--------------------- |
427 |
Q |
| |
|
|||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15471332 |
aattcatgctgatttaagctgtgactcgtttataggacagttcacatatcatataatgagtgacccgtgtctattttaaacaaaaattaggggatttata |
15471431 |
T |
|
| Q |
428 |
-gcattccagcatatttactcaggtgtaaaattgtggttcatgttttttaagtttgacagttgttataaattcatgtatattgtagaaatatgttgaaga |
526 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15471432 |
agcaatccagcatatttattcaggtgtaaaattgtggttcatgtttt--aagtttgacagttgttataaattcatgtatactgtagaaatatgttgaaga |
15471529 |
T |
|
| Q |
527 |
tttggagttgctttttaagatatggta |
553 |
Q |
| |
|
|||||||| | |||||||||||||||| |
|
|
| T |
15471530 |
tttggagtagttttttaagatatggta |
15471556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 15471135 - 15471225
Alignment:
| Q |
218 |
gtaatgtaccgtgtaattttatagttatttaagctgtgactgggttgtatgtatgccaatgcaaaaattatgttcaagcaaaagtgctagat |
309 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15471135 |
gtaatgtaccgtgtaattc-atagttatttaagctgtaactgggttgtatatatgccaatgcaaaaattatgttcaagcaaaactgctagat |
15471225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 15470944 - 15471086
Alignment:
| Q |
86 |
ggctgcattatatacaggcaatgtaccatgtaattcatagtaaggtaagctg-----tgactgggttgtat--gccaatacaaatattaggctcaagcaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || | ||||||| |||||||||||||| |||||||||||||||||| ||||| || |
|
|
| T |
15470944 |
ggctgcattatatacaggcaatgtaccatgtatttcatggtgatttaagctgtgacttgactgggttgtataagccaatacaaatattaggttcaagaaa |
15471043 |
T |
|
| Q |
179 |
aattgctagacagtaatgtatgttatctctatctttcaagtaa |
221 |
Q |
| |
|
|| |||| || | ||||||||||| ||| | |||||||||||| |
|
|
| T |
15471044 |
aagtgctggataataatgtatgttttctatgtctttcaagtaa |
15471086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 15471131 - 15471224
Alignment:
| Q |
99 |
acaggcaatgtaccatgtaattcatagtaaggtaagctgtgactgggttg----tatgccaatacaaatattaggctcaagcaaaattgctaga |
188 |
Q |
| |
|
||||| |||||||| ||||||||||||| | |||||||| ||||||||| ||||||||| |||| |||| | |||||||||| ||||||| |
|
|
| T |
15471131 |
acaggtaatgtaccgtgtaattcatagttatttaagctgtaactgggttgtatatatgccaatgcaaaaattatgttcaagcaaaactgctaga |
15471224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 580 - 611
Target Start/End: Original strand, 15471565 - 15471596
Alignment:
| Q |
580 |
actagctagggagaaaagttatggatcgccag |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15471565 |
actagctagggagaaaagttatggatcgccag |
15471596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 15470838 - 15470880
Alignment:
| Q |
267 |
tgtatgccaatgcaaaaattatgttcaagcaaaagtgctagat |
309 |
Q |
| |
|
||||||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
15470838 |
tgtatgctaatacaaaaaatatgttcaagcaaaagtgctagat |
15470880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University