View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8953_low_1 (Length: 559)
Name: NF8953_low_1
Description: NF8953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8953_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 6021581 - 6022125
Alignment:
| Q |
1 |
ctaaacaagataatgagatgcaatttcctgagaagattgctggaaaaaggcaggtaagaagatctggaaaacaaaggctggatgttgtggatgacccacc |
100 |
Q |
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| T |
6021581 |
ctaaacaagataatgagatgcaatttcctgagaagattgctggaaaaaggcaggtaagaagatctggaaaacaaaggctggatgttgtggatgacccacc |
6021680 |
T |
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| Q |
101 |
tgaggatttaacttcagtgcaaaaccaatgcaaagagcttgctggatctgcttcatccagtttaagactgcaaatggatagtaatagaaacactgtcaat |
200 |
Q |
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| T |
6021681 |
tgaggatttaacttcagtgcaaaaccaatgcaaagagcttgctggatctgcttcatccagtttaagactgcaaatggatagtaatagaaacactgtcaat |
6021780 |
T |
|
| Q |
201 |
actagaaaaagaaaaagcagtttgtcaagaaaatccacaccttctgttacagaaaggaagagtactaaaaagtcaaaactttcccctgaattcatctcta |
300 |
Q |
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| T |
6021781 |
actagaaaaagaaaaagcagtttgtcaagaaaatccacgccttctgttacagaaaggaagagtactaaaaagtcaaaactttcccctgaattcatctcta |
6021880 |
T |
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| Q |
301 |
ggactaaaaatggtgaggaaattaagcctactggaagtaccaatccaggtactgatgtcaggcctttgaatgattcatccaaagagaaacactgtagttt |
400 |
Q |
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| T |
6021881 |
ggactaaaaatggtgaggaaattaagcctactggaagtaccaatccaggtactgatgtcaggcctttgaatgattcatccaaagagaaacactgtagttt |
6021980 |
T |
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| Q |
401 |
gacggatcaaccggttttaaggaaatgtgtgagccatgccaaagagtatcaatgtgctttctgtctctcgtcagaagaatcagaggtaaaattgtttgct |
500 |
Q |
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| T |
6021981 |
gacggatcaaccggttttaaggaaatgtgtgagccatgccaaagagtatcaatgtgctttctgtctctcgtcagaagaatcagaggtaaaattgtttgct |
6022080 |
T |
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| Q |
501 |
tgcttatcttgtcatccttaaaaatggactggaacttactttatg |
545 |
Q |
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| T |
6022081 |
tgcttatcttgtcatccttaaaaatggactggaacttactttatg |
6022125 |
T |
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