View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8953_low_10 (Length: 244)
Name: NF8953_low_10
Description: NF8953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8953_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 3303742 - 3303985
Alignment:
| Q |
1 |
tgcttccctaatttgtttcttcttggccaactagccatcacaaatacagaatcattcttcttttgttctaaacagtttcttatcttgatgtgacttaaaa |
100 |
Q |
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| T |
3303742 |
tgcttccctaatttgtttcttcttggccaactagccatcacaaatacagaatcattcttcttttgttctaaacagtttcttatcttgatgtgacttaaaa |
3303841 |
T |
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| Q |
101 |
attataaaaccaatcgcacattgtaggtactacgtaatttgaggaattaaagtaccaatttatttcattaatttggattcttaacatctggaaaaaactc |
200 |
Q |
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| T |
3303842 |
attataaaaccaatcgcacattgtaggtactacgtaatttgaggaattaaagtaccaatttatttcattaatttggattcttaacatctggaaaaaactc |
3303941 |
T |
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| Q |
201 |
cgaccaagctcataacctgaggcaaaagatactatgcaaataac |
244 |
Q |
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| T |
3303942 |
cgaccaagctcataacctgaggcaaaagatactatgcaaataac |
3303985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 3291869 - 3292040
Alignment:
| Q |
17 |
ttcttcttggccaactagccatcacaaatacagaatcattcttcttttgttctaaacagtttcttatcttgatgtgactta-aaaattataaaaccaatc |
115 |
Q |
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||||| |||||||| |||||| |||||||||| ||||||||| ||||||| ||||||||||||| ||||| |||||| || ||||||||| ||| | || |
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| T |
3291869 |
ttctttttggccaattagccaccacaaatacaacatcattcttattttgttttaaacagtttcttttcttggtgtgacatagaaaattatacaacaattc |
3291968 |
T |
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| Q |
116 |
gcacattgtaggtactacgtaatttgaggaattaaagtaccaatttatttcattaatttggattcttaacatct |
189 |
Q |
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| T |
3291969 |
agacattgtaggtaccaagtaatttgaggaattgaa-ta-caatttattttattaatttggtttcttaccatct |
3292040 |
T |
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