View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8953_low_2 (Length: 422)
Name: NF8953_low_2
Description: NF8953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8953_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 28493192 - 28492785
Alignment:
| Q |
1 |
aaattgagtcaataataagggatagaagatcttcttctcaaacaaataaacataccctcccaaacaatcaaccccaactccaaagatgagaaaccctaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28493192 |
aaattgagtcaataataagggatagaagatcttcttctcaaacaaataaacataccctcccaaacaatcaaccccaactccaaagatgagaaaccctaat |
28493093 |
T |
|
| Q |
101 |
attccactacctaaaaacagaaagagaccagattccccatctctaatggatttccccaaaaattcaataaaccactaagaactcaaatgagaaaacacac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28493092 |
attccactacctaaaaacagaaagagaccagattccccatctctaatggatttccccaaaaattcaataaaccactaagaactcaaatgagaaaacacac |
28492993 |
T |
|
| Q |
201 |
acagaaggtagatatccttccatggcatagaataatagtgagtaaggttgaccccttccaaatagggggaataatatggttgcgaaatgatactttgctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28492992 |
acagaaggtagatatccttccatggcatagaataatagtgagtaaggttgaccccttccaaatagggggaataatatggttgcgaaatgatactttgctt |
28492893 |
T |
|
| Q |
301 |
ataggacctcccttcataaggttactagttattctaattaccaccacctccacttgctagcaaactcaggttcacaaatttatggtttctcaccaccaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28492892 |
ataggacctcccttcataaggttactagttattctaattaccaccacctccacttgctagcaaactcaggttcacaaatttatggtttctcaccaccaac |
28492793 |
T |
|
| Q |
401 |
ccaccctc |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
28492792 |
ccaccctc |
28492785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University