View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8953_low_6 (Length: 332)
Name: NF8953_low_6
Description: NF8953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8953_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 39813889 - 39813589
Alignment:
| Q |
17 |
atttcatctccaaatacggattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
116 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813889 |
atttcatctccaaatacagattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
39813790 |
T |
|
| Q |
117 |
ttttcatcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattgg |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813789 |
ttttcttcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattgg |
39813690 |
T |
|
| Q |
217 |
accctcatgtttccttgtgaagaatttcttcaactctgatcctgatacctgtgatgagttaattatttaacacattagtacgtttgctagttatgaaaca |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39813689 |
accctcatgtttccttgtgaagaatttcttcaactctgatcctgatacctgtgatgagttaattatttaacacattagtacgtttgctagttatgaaaca |
39813590 |
T |
|
| Q |
317 |
c |
317 |
Q |
| |
|
| |
|
|
| T |
39813589 |
c |
39813589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 39921666 - 39921388
Alignment:
| Q |
17 |
atttcatctccaaatacggattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
116 |
Q |
| |
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|||||| |||||||||| |||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39921666 |
atttcacctccaaatacagattccaatagcttcctccaagaccaacttgttttttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
39921567 |
T |
|
| Q |
117 |
ttttcatcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattgg |
216 |
Q |
| |
|
||||| ||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
39921566 |
ttttcttcatgtggtgtagtttctcttcctcttttaattgaaggaatttagtccatatgcttgaagcacttgcatgtgaacggcccacatgtacaattgg |
39921467 |
T |
|
| Q |
217 |
accctcatgtttccttgtgaagaatttcttcaactctgatcctgatacctgtgatgagttaattatttaacacattagt |
295 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
39921466 |
accctcatgtttccttgtgaagaatttactcaactctgatcctgatacctgggatgagttaattattaaacacattagt |
39921388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 295
Target Start/End: Complemental strand, 39910347 - 39910069
Alignment:
| Q |
17 |
atttcatctccaaatacggattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
116 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39910347 |
atttcatttccaaatacagattccaatagcttcctccaagaccaacttgtcttttgctttacttcttcttcaacgtcatcttcttcttgatcttgaatca |
39910248 |
T |
|
| Q |
117 |
ttttcatcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattgg |
216 |
Q |
| |
|
||||| ||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
39910247 |
ttttcttcatgtgatgcaatttctcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacgtgtacaattgg |
39910148 |
T |
|
| Q |
217 |
accctcatgtttccttgtgaagaatttcttcaactctgatcctgatacctgtgatgagttaattatttaacacattagt |
295 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
39910147 |
accctcatgtttccttgtgaagaatttactcaactctgatcctgatacctgtgatgagttaattattaaacatattagt |
39910069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 39926954 - 39926705
Alignment:
| Q |
17 |
atttcatctccaaatacggattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
116 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39926954 |
atttcatctccaaatacagattccaatagcttcctccaagaccaacttgtcttttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
39926855 |
T |
|
| Q |
117 |
ttttcatcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattgg |
216 |
Q |
| |
|
||||| ||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39926854 |
ttttcttcatgtgatgcaatttctcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccatgtgtacaattgg |
39926755 |
T |
|
| Q |
217 |
accctcatgtttccttgtgaagaatttcttcaactctgatcctgatacct |
266 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39926754 |
accctcatgtttccttgtgaataatttcttcaactctgatcctgatacct |
39926705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 315
Target Start/End: Complemental strand, 39825392 - 39825100
Alignment:
| Q |
26 |
ccaaatacggattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttctt---cttgatcttgcatcattttca |
122 |
Q |
| |
|
|||||||| |||||||| | |||||||||| |||| ||||| ||||| ||||||| || || | || ||||||| ||| ||||||||||||||||| |
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| T |
39825392 |
ccaaatacagattccaataagttcctccaagaccaacttgttttttgcattacttcatcatcttcttcttcttcttgttcttcatcttgcatcattttca |
39825293 |
T |
|
| Q |
123 |
tcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattggaccctc |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||||| |
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|
| T |
39825292 |
tcatgtggtttagtttgtcatcctcttttagttgaaggaattttgtccatatgtttgaagcacttggatgtgaacggcccacgtgtacaattggaccctc |
39825193 |
T |
|
| Q |
223 |
atgtttccttgtgaagaatttcttcaactctgatcctgatacctgtgatgagttaattatttaacacattagtacgtttgctagttatgaaac |
315 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
39825192 |
atgtttccttgtgaagaatttcatcaactttgatcctgatacctatgatgaattaattatttaacacattagtatgtttgctagctatgaaac |
39825100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 101 - 315
Target Start/End: Complemental strand, 39805277 - 39805063
Alignment:
| Q |
101 |
tcttgatcttgcatcattttcatcatgtggtttagtttgtcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggc |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||| |
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|
| T |
39805277 |
tcttgatcttgcatcattttcttcatgtggtttagtttctcatcctcttttagttgaaggaattttgtccatatgcttgaagaacttgcatgtgaacggc |
39805178 |
T |
|
| Q |
201 |
ccacatgtacaattggaccctcatgtttccttgtgaagaatttcttcaactctgatcctgatacctgtgatgagttaattatttaacacattagtacgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| |
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|
| T |
39805177 |
ccacatgtacaattggaccctcatttttccttgtgaagaatttcatcaactttgatcctgatacctgtgatgagttaatcatttaacacattagtaagtt |
39805078 |
T |
|
| Q |
301 |
tgctagttatgaaac |
315 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
39805077 |
tgctagcaatgaaac |
39805063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 140 - 290
Target Start/End: Complemental strand, 39882861 - 39882711
Alignment:
| Q |
140 |
tcatcctcttttagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaatggcccacatgtacaattggaccctcatgtttccttgtgaaga |
239 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
39882861 |
tcatcctctttcagttgaaggaatttagtccatatgcttgaagcacttgcatgtgaagggcccacgtgtacaattggaccctcatttttccttgtgaaga |
39882762 |
T |
|
| Q |
240 |
atttcttcaactctgatcctgatacctgtgatgagttaattatttaacaca |
290 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
39882761 |
atttcatcaactctgatcctgatacctatgatgagtaaattattaaacaca |
39882711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 39901998 - 39901889
Alignment:
| Q |
17 |
atttcatctccaaatacggattccaaaagcttcctccaaggccaatttgttgtttgctttacttcttcttcaacgtcatcttcttcttgatcttgcatca |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39901998 |
atttcatctccaaatactgattccaaaagctccctccaagaccaacttgttttttgctttacttcttcttcaa---catcttcttcttgatcttgcatca |
39901902 |
T |
|
| Q |
117 |
ttttcatcatgtg |
129 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
39901901 |
ttttcttcatgtg |
39901889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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