View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8953_low_9 (Length: 309)
Name: NF8953_low_9
Description: NF8953
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8953_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 28 - 297
Target Start/End: Original strand, 45969428 - 45969697
Alignment:
| Q |
28 |
gttgtaattgtgacatttattataggaaagagggagtaataattatgtaacagagaagtcatttccataatctatgttgatcattgacttcataagatga |
127 |
Q |
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| T |
45969428 |
gttgtaattgtgacatttattataggacagagggagtaataattatgtaacagagaagtcatttccataatctatgttgatcattgacttcataagatga |
45969527 |
T |
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| Q |
128 |
nnnnnnnnnctatggttggttccttgataggattgtggtggatcattctgcttagagcttatgggaaactcactggtgactacagcttgcaagaaaagtt |
227 |
Q |
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| T |
45969528 |
tttttttttctatggttggttccttgataggattgtggtggatcattctgcttagagcttatgggaaactcactggtgactacagcttgcaagaaaagtt |
45969627 |
T |
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| Q |
228 |
ggaagtgcaaacaggcttacgaatgatccttaacctatgtttatcagatggatttgatatgtttccgtct |
297 |
Q |
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| T |
45969628 |
ggaagtgcaaacaggcttacgaatgatccttaacctatgtttatcagatggatttgatatgtttccgtct |
45969697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 302
Target Start/End: Complemental strand, 37653958 - 37653807
Alignment:
| Q |
151 |
ttgataggattgtggtggatcattctgcttagagcttatgggaaactcactggtgactacagcttgcaagaaaagttggaagtgcaaacaggcttacgaa |
250 |
Q |
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||||||||||||||||||||||| || | | ||||||||||| |||| ||||||||||| |||||||||| | | || || ||||||||||| || |
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| T |
37653958 |
ttgataggattgtggtggatcatcctattacgggcttatgggaagatcaccggtgactacagtttgcaagaaagggttgatgttcaaacaggcttgaaaa |
37653859 |
T |
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| Q |
251 |
tgatccttaacctatgtttatcagatggatttgatatgtttccgtctctgct |
302 |
Q |
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| T |
37653858 |
tgattcttaaattgtgtctaacagatggttttgatatgtttccatctctgct |
37653807 |
T |
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