View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8954_low_1 (Length: 1119)

Name: NF8954_low_1
Description: NF8954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8954_low_1
NF8954_low_1
[»] chr4 (6 HSPs)
chr4 (412-1109)||(4673903-4674589)
chr4 (24-414)||(4674646-4675038)
chr4 (34-79)||(16936151-16936196)
chr4 (37-91)||(39466324-39466378)
chr4 (696-802)||(51626285-51626391)
chr4 (34-95)||(40361736-40361797)
[»] chr1 (6 HSPs)
chr1 (730-822)||(28724708-28724800)
chr1 (17-95)||(11435288-11435366)
chr1 (34-89)||(11434687-11434742)
chr1 (695-802)||(18428120-18428226)
chr1 (36-74)||(7013189-7013227)
chr1 (758-791)||(19238840-19238873)
[»] chr3 (9 HSPs)
chr3 (17-89)||(4041076-4041149)
chr3 (695-798)||(27763781-27763884)
chr3 (695-807)||(1642657-1642769)
chr3 (720-820)||(22288273-22288373)
chr3 (17-89)||(4040865-4040936)
chr3 (754-826)||(22288553-22288625)
chr3 (707-817)||(39950253-39950363)
chr3 (34-75)||(52562658-52562699)
chr3 (34-75)||(52562776-52562817)
[»] chr6 (6 HSPs)
chr6 (34-95)||(5741208-5741269)
chr6 (719-802)||(28099299-28099382)
chr6 (34-95)||(5741511-5741572)
chr6 (724-791)||(17457073-17457140)
chr6 (37-75)||(31778783-31778821)
chr6 (730-791)||(12411215-12411276)
[»] chr5 (9 HSPs)
chr5 (695-802)||(10591983-10592090)
chr5 (17-95)||(25868041-25868119)
chr5 (720-791)||(29553606-29553677)
chr5 (688-790)||(5051657-5051760)
chr5 (17-95)||(16060787-16060865)
chr5 (17-75)||(25868547-25868605)
chr5 (36-74)||(26092518-26092556)
chr5 (36-74)||(40018095-40018133)
chr5 (33-74)||(14410825-14410866)
[»] chr7 (2 HSPs)
chr7 (37-95)||(46273524-46273582)
chr7 (719-820)||(45778902-45779003)
[»] chr2 (4 HSPs)
chr2 (32-74)||(33710848-33710890)
chr2 (34-89)||(42808648-42808703)
chr2 (34-89)||(42882491-42882546)
chr2 (35-89)||(6402418-6402472)
[»] chr8 (7 HSPs)
chr8 (17-74)||(7130659-7130716)
chr8 (34-79)||(23769094-23769139)
chr8 (719-802)||(2743989-2744072)
chr8 (36-95)||(7130065-7130124)
chr8 (34-93)||(39870852-39870911)
chr8 (37-75)||(43532013-43532051)
chr8 (772-853)||(27121805-27121886)
[»] scaffold0007 (1 HSPs)
scaffold0007 (37-75)||(256441-256479)


Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 412 - 1109
Target Start/End: Complemental strand, 4674589 - 4673903
Alignment:
Q  412 tatttgttaagattttttcttaaaaaacttttgtttgtacaaacataaccacttattaaagtttttatctgtttgttactttctttgaagagaatctgaa 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4674589 tatttgttaagattttttcttaaaaaacttttgtttgtacaaacataaccacttattaaagttttcatctgtttgttactttctttgaagagaatctgaa 4674490  T
Q  512 gcactctaaaaagattttcattatggtatggtagaaacacactaaatagtccctgcatttcataataatatataatttttaatatcacctcnnnnnnnnn 611  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             
T  4674489 gcactctaaaaagattttcattatggta-----gaaacacactaaatagtccctgcatttcataaaaatatataatttttaatatcacctcaaaaacgaa 4674395  T
Q  612 nnnncaaacagatttatatctacacatagttgactgttagactctttagagnnnnnnnnnnnnngataacacataattttctagtgtaaatctgatatcc 711  Q
        |||||||||| ||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||| ||||||||    
T  4674394 aaaacaaacagattaatatctacacatagttgactgttagactctttagagaaaaaggaaaaaagataacacataattttctagtgtaaatatgatatcc 4674295  T
Q  712 tctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaact 811  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||| |||||||||| |||||||| |||||||    
T  4674294 tctgcatgcaactgcagtgattaatcccttaagcattgcaggatttaaatggacgacaaactctttctaaaaattttaacaccattgcatgtccaaaact 4674195  T
Q  812 gaattcgaatctaaatcattggttaaactagaaaaaacccgtatca-tcccatccaaacgcttctttgctagataatacataattaatcacacaaaaatg 910  Q
     |||||||| | |||||||||||||||||| ||||||     |||| || |||||||||||||  |||||||||||||||||||||||||||||||||||    
T  4674194 aaattcgaacccaaatcattggttaaactaaaaaaaa-----atcaatcacatccaaacgctt--ttgctagataatacataattaatcacacaaaaatg 4674102  T
Q  911 gaattagatattaacaattctgcatataatctatgagccacagccacaagttctctaggagcaatcactatcaaggacaaaaagttggtccacatcgaaa 1010  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674101 gaattagatattaacaattctgcatataatctatgaaccacagccacaagttctctaggagcaatcactatcaaggacaaaaagttggtccacatcgaaa 4674002  T
Q  1011 tccatgtcaccaaccccagataagcaagaggataagctatcccacttcatcaccctcagatggatactctccctaatccaacggctacaaacaccaaac 1109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674001 tccatgtcaccaaccccagataagcaagaggataagctatcccacttcatcaccctcagatggatactctccctaatccaacggctacaaacaccaaac 4673903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 24 - 414
Target Start/End: Complemental strand, 4675038 - 4674646
Alignment:
Q  24 aggtcctttattttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcgaactt---gtgcagggtgaagagcaggat 120  Q
    |||||| ||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||| ||||| |     |||||||||||||||||||||    
T  4675038 aggtcccttattttttacacttgcattagttaactagcacatgggtattttggtcatgactgcagggcgcgagcgaaaagtgcagggtgaagagcaggat 4674939  T
Q  121 tcaatttattttgactaggttggattaaggattttcctccaatctggcttcttttgtatccgaggatattcctcctccttctgtttctcgtgttgcttaa 220  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4674938 tcaatttattttgaccagcttggattaaggattttcctccaatctggcttcttttgtatccgaggatattcctcctccttctgtttctcgtgttgcttaa 4674839  T
Q  221 tgaagtatttttccttgcaaagggaatcattttggcctgtaaatctgtatatcagtattttnnnnnnnttagttcacattttgcaagtaaccgataccaa 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| |||| |||    
T  4674838 tgaagtatttttccttgcaaagggaatcattttggcctgtaaatctgtatatcagtattttcaaaaaattagttcacattttgcaagtaactgatagcaa 4674739  T
Q  321 attaactaataaagtacacatttgataaacaaactaactaaagaaacatacattcgagactcaagttgacttaagaaatgcatattaaaaatat 414  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4674738 attaactaataaa-tacacatttaataaataaactaactaaagaaacatacattcgagactctagttgacttaagaaatgcatattaaaaatat 4674646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 16936151 - 16936196
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatca 79  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  16936151 ttttttacacttgcgttagttaactagcgcaagggtattttgatca 16936196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 39466324 - 39466378
Alignment:
Q  37 tttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggac 91  Q
    ||||||| ||||||||||||||| ||||||| |||||||  |||| |||||||||    
T  39466324 tttacacttgcgttagttaactaacgcatggatattttgggcatgcctgcaggac 39466378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 696 - 802
Target Start/End: Original strand, 51626285 - 51626391
Alignment:
Q  696 tgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccg 795  Q
    |||||||| | ||||||| ||  |||||||| | |||||||| ||  |||| ||  |||| |||||||||| || ||||| ||||||||||||||||| |    
T  51626285 tgtaaatcgggtatcctccgcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactg 51626384  T
Q  796 ttgcatg 802  Q
     ||||||    
T  51626385 ctgcatg 51626391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 40361736 - 40361797
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||||| | || ||||||||||||||| || ||||||| ||||| ||||||| |||||    
T  40361736 ttttttacacgtacgctagttaactagcgcagggatattttggtcatggctgcagggcgcga 40361797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 8e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 730 - 822
Target Start/End: Complemental strand, 28724800 - 28724708
Alignment:
Q  730 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatc 822  Q
    |||||||||||  | ||||| |||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||  |||||||||||||    
T  28724800 gactaatccctcgaacattgtaggactcaaatggacggcagactcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatc 28724708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 11435288 - 11435366
Alignment:
Q  17 aaaaactaggtcctttattttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||| ||| |||||||| |||||  |||||| |||||    
T  11435288 aaaaactaagtcccttattttttacacttgcgttagttaactagcgtatgagtattttggtcatggttgcagggcgcga 11435366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 11434742 - 11434687
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcagg 89  Q
    |||||||||| |||||||||||||||||||| | |||||||| ||||| |||||||    
T  11434742 ttttttacacttgcgttagttaactagcgcaggagtattttggtcatggctgcagg 11434687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 695 - 802
Target Start/End: Original strand, 18428120 - 18428226
Alignment:
Q  695 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 794  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  || | |||||||||  || ||||| |||||||||||||||||     
T  18428120 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtggggc-caaatggacagcagactctccctaaaagttttaacact 18428218  T
Q  795 gttgcatg 802  Q
    | ||||||    
T  18428219 gctgcatg 18428226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 7013227 - 7013189
Alignment:
Q  36 ttttacacctgcgttagttaactagcgcatgggtatttt 74  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  7013227 ttttacacttgcgttagttaactagcgcatgagtatttt 7013189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 758 - 791
Target Start/End: Original strand, 19238840 - 19238873
Alignment:
Q  758 aaatggacgacaaactcttcctaaaagttttaac 791  Q
    |||||||||||||||||| |||||||||||||||    
T  19238840 aaatggacgacaaactctccctaaaagttttaac 19238873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 4041076 - 4041149
Alignment:
Q  17 aaaaactaggtcctttatttttt-acacctgcgttagttaactagcgcatgggtattttgatcatgactgcagg 89  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  4041076 aaaaactaggtcccttatttttttacacttgcgttagttaactagcacatgggtattttggtcatgactgcagg 4041149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 695 - 798
Target Start/End: Complemental strand, 27763884 - 27763781
Alignment:
Q  695 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 794  Q
    ||||||| | ||||||||||||  |||||||| | |||||||||||  |||||||  ||||||||||||||| || ||||| ||||| |||||||||||     
T  27763884 gtgtaaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacact 27763785  T
Q  795 gttg 798  Q
    ||||    
T  27763784 gttg 27763781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 695 - 807
Target Start/End: Complemental strand, 1642769 - 1642657
Alignment:
Q  695 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 794  Q
    ||||||||| ||||||||| ||  |||||||| |  |||||||||| ||| ||||  |||| ||||||||||  | ||||| |||||||||||||||||     
T  1642769 gtgtaaatcggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacg 1642670  T
Q  795 gttgcatgttcaa 807  Q
    | |||||||||||    
T  1642669 gctgcatgttcaa 1642657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 820
Target Start/End: Complemental strand, 22288373 - 22288273
Alignment:
Q  720 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcga 819  Q
    ||||||||| ||||||| |||| || ||||    |||||||||||||||||  ||| ||||| ||||||||||  |||||||||||||  ||||||||||    
T  22288373 caactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgttgcatgttcaaggctgaattcga 22288274  T
Q  820 a 820  Q
    |    
T  22288273 a 22288273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 4040936 - 4040865
Alignment:
Q  17 aaaaactaggtcctttattttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcagg 89  Q
    |||||||| |||| |||||||| |||| |||||||||||| ||||||| || ||||||| ||||| |||||||    
T  4040936 aaaaactaagtcccttattttt-acacttgcgttagttaattagcgcagggatattttggtcatggctgcagg 4040865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 754 - 826
Target Start/End: Complemental strand, 22288625 - 22288553
Alignment:
Q  754 actcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaa 826  Q
    ||||||||| |||||||  |||  |||| ||||||| ||| |||||||||||||| ||||||||||| |||||    
T  22288625 actcaaatgtacgacaagttctcactaagagttttagcactgttgcatgttcaaagctgaattcgaacctaaa 22288553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 707 - 817
Target Start/End: Complemental strand, 39950363 - 39950253
Alignment:
Q  707 tatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttca 806  Q
    ||||||| |||||||||||| | ||||||||| |  |||||||  |||  |||||| |||||| | ||| ||||||| ||||||| | | ||||||| ||    
T  39950363 tatcctccgcatgcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgtcca 39950264  T
Q  807 aaactgaattc 817  Q
    |||||| ||||    
T  39950263 aaactggattc 39950253  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 52562699 - 52562658
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttg 75  Q
    |||||||||| | |||||||||||||||||| ||||||||||    
T  52562699 ttttttacacttacgttagttaactagcgcaggggtattttg 52562658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 52562776 - 52562817
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttg 75  Q
    |||||||||| |||| ||||||||||||||| ||||||||||    
T  52562776 ttttttacacttgcgctagttaactagcgcaggggtattttg 52562817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 5741269 - 5741208
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||||| |||||||| |||||||||||| ||||||||| ||||| |||||||||||||    
T  5741269 ttttttacacttgcgttagataactagcgcattggtattttggtcatggctgcaggacgcga 5741208  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 719 - 802
Target Start/End: Complemental strand, 28099382 - 28099299
Alignment:
Q  719 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 802  Q
    |||||||| | |||||||||||  ||||||   | |||||||||||||||||| ||| ||||||||||||||||| | ||||||    
T  28099382 gcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgctgcatg 28099299  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 5741511 - 5741572
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||||| ||||||||||||||| |||| | |||||||| ||||| ||||||| |||||    
T  5741511 ttttttacacttgcgttagttaactaacgcaggtgtattttggtcatggctgcagggcgcga 5741572  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 724 - 791
Target Start/End: Original strand, 17457073 - 17457140
Alignment:
Q  724 tgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 791  Q
    ||||| ||||||||| ||||||||||  || || |||| | |||||| ||||||||||||||||||||    
T  17457073 tgcagagactaatcctttaagcattgtgggtcttaaataggcgacaagctcttcctaaaagttttaac 17457140  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 31778821 - 31778783
Alignment:
Q  37 tttacacctgcgttagttaactagcgcatgggtattttg 75  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  31778821 tttacacatgcgttagttaactagcgcaggggtattttg 31778783  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 730 - 791
Target Start/End: Complemental strand, 12411276 - 12411215
Alignment:
Q  730 gactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 791  Q
    ||||||||||| ||||||||  ||||| |||||| || || ||||||||||| |||||||||    
T  12411276 gactaatccctcaagcattgtgggacttaaatgggcggcagactcttcctaagagttttaac 12411215  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 695 - 802
Target Start/End: Complemental strand, 10592090 - 10591983
Alignment:
Q  695 gtgtaaatctgatatcctctgcatgcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacacc 794  Q
    ||||||||| | ||||||| ||  |||||||||| |||||||||||  |||||||  |||||||||||| || || ||||| ||||| |||||||||||     
T  10592090 gtgtaaatcgggtatcctccgcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacact 10591991  T
Q  795 gttgcatg 802  Q
    | ||||||    
T  10591990 gctgcatg 10591983  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 25868119 - 25868041
Alignment:
Q  17 aaaaactaggtcctttattttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||| |||| ||||||||||||| |||||||||||||||||| | || ||||||| | ||| ||||||| |||||    
T  25868119 aaaaactaagtcccttattttttacacttgcgttagttaactagcgtagggttattttggtgatggctgcagggcgcga 25868041  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 720 - 791
Target Start/End: Complemental strand, 29553677 - 29553606
Alignment:
Q  720 caactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaac 791  Q
    ||||||||| |||||||| ||| ||||||   |||| ||||||||||||||||||| ||||| |||||||||    
T  29553677 caactgcagagactaatctcttgagcattctgggacccaaatggacgacaaactctccctaagagttttaac 29553606  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 688 - 790
Target Start/End: Complemental strand, 5051760 - 5051657
Alignment:
Q  688 ttttctagtgtaaatctgatatcctctgcatgcaact-gcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagtt 786  Q
    |||| ||||||||||| |  |||||||||| |||||| ||||  ||||||| ||  |||||||   ||||||||||||||||||| ||| ||||||| ||    
T  5051760 ttttttagtgtaaatcgggcatcctctgcacgcaacttgcagaaactaatctctcgagcattgtgagactcaaatggacgacaaagtctccctaaaattt 5051661  T
Q  787 ttaa 790  Q
    ||||    
T  5051660 ttaa 5051657  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 16060787 - 16060865
Alignment:
Q  17 aaaaactaggtcctttattttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||| || | ||||||||||||| ||| |||||||| ||| | | |||||||||| ||||| ||||||| |||||    
T  16060787 aaaaactaagttccttattttttacacttgctttagttaattagtgtaagggtattttggtcatggctgcagggcgcga 16060865  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 25868547 - 25868605
Alignment:
Q  17 aaaaactaggtcctttattttttacacctgcgttagttaactagcgcatgggtattttg 75  Q
    ||||||||  || |||||||||||||| |||| ||||||||||||||| ||| ||||||    
T  25868547 aaaaactaaatcttttattttttacacttgcgctagttaactagcgcaggggcattttg 25868605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 26092556 - 26092518
Alignment:
Q  36 ttttacacctgcgttagttaactagcgcatgggtatttt 74  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  26092556 ttttacacttgcgttagttaactagcgcaagggtatttt 26092518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 40018133 - 40018095
Alignment:
Q  36 ttttacacctgcgttagttaactagcgcatgggtatttt 74  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  40018133 ttttacacttgcgttagttaactaacgcatgggtatttt 40018095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 14410825 - 14410866
Alignment:
Q  33 attttttacacctgcgttagttaactagcgcatgggtatttt 74  Q
    |||||||||||  ||||||||||||||||||| |||||||||    
T  14410825 attttttacactcgcgttagttaactagcgcaggggtatttt 14410866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Original strand, 46273524 - 46273582
Alignment:
Q  37 tttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    ||||||| ||||||||||||||| |||||||||||||||| || ||||||| |||||||    
T  46273524 tttacacttgcgttagttaactaacgcatgggtattttgaacaagactgcaagacgcga 46273582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 719 - 820
Target Start/End: Complemental strand, 45779003 - 45778902
Alignment:
Q  719 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcg 818  Q
    |||||||| | |||||||||||  || ||||   |||||||| |||||||||||  | |||||||| ||||||||||||| |||| ||| ||||||||||    
T  45779003 gcaactgcggagactaatccctcgagtattgtgagactcaaacggacgacaaacaatccctaaaagctttaacaccgttgtatgtccaagactgaattcg 45778904  T
Q  819 aa 820  Q
    ||    
T  45778903 aa 45778902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 33710890 - 33710848
Alignment:
Q  32 tattttttacacctgcgttagttaactagcgcatgggtatttt 74  Q
    |||||||||||| |||||||||||||||||||| |||||||||    
T  33710890 tattttttacacttgcgttagttaactagcgcaggggtatttt 33710848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 42808648 - 42808703
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcagg 89  Q
    |||||||||| ||||||||||||||| |||| | ||||||| |||||| |||||||    
T  42808648 ttttttacacttgcgttagttaactaacgcaggagtattttcatcatggctgcagg 42808703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 42882546 - 42882491
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcagg 89  Q
    |||||||||| |||||||||||||||||| | |||||||||  ||||| |||||||    
T  42882546 ttttttacacttgcgttagttaactagcgtaggggtattttagtcatggctgcagg 42882491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 6402418 - 6402472
Alignment:
Q  35 tttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcagg 89  Q
    ||||||||| | |||||||||||||||| | || ||||||| |||||||||||||    
T  6402418 tttttacacttacgttagttaactagcgtagggatattttggtcatgactgcagg 6402472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 7130659 - 7130716
Alignment:
Q  17 aaaaactaggtcctttattttttacacctgcgttagttaactagcgcatgggtatttt 74  Q
    |||||||| ||| |||||||||||||| ||||||||||||||| | || |||||||||    
T  7130659 aaaaactaagtcgtttattttttacacttgcgttagttaactaacacaggggtatttt 7130716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 23769094 - 23769139
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatca 79  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||    
T  23769094 ttttttacatttgcgttagttaactagcgcatggatattttgatca 23769139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 719 - 802
Target Start/End: Complemental strand, 2744072 - 2743989
Alignment:
Q  719 gcaactgcagtgactaatcccttaagcattgcaggactcaaatggacgacaaactcttcctaaaagttttaacaccgttgcatg 802  Q
    |||||||| | |||||||||||  |||||||  |||| |||||||||||||  |||| ||||| ||||||||||| | ||||||    
T  2744072 gcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgctgcatg 2743989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 7130124 - 7130065
Alignment:
Q  36 ttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgcga 95  Q
    |||||||| ||  ||| ||||||||||||  | |||||||||||||||||||||||||||    
T  7130124 ttttacacttgtattaattaactagcgcagagatattttgatcatgactgcaggacgcga 7130065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 39870911 - 39870852
Alignment:
Q  34 ttttttacacctgcgttagttaactagcgcatgggtattttgatcatgactgcaggacgc 93  Q
    |||||||||| |||||||||||||||||||| || |||||||  || ||||||| |||||    
T  39870911 ttttttacacttgcgttagttaactagcgcaaggatattttgggcaagactgcaagacgc 39870852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 43532051 - 43532013
Alignment:
Q  37 tttacacctgcgttagttaactagcgcatgggtattttg 75  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  43532051 tttacacctgcgttagttaactaacgcaggggtattttg 43532013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 853
Target Start/End: Original strand, 27121805 - 27121886
Alignment:
Q  772 ctcttcctaaaagttttaacaccgttgcatgttcaaaactgaattcgaatctaaatcattggttaaactagaaaaaacccgt 853  Q
    |||||||||||||||||||||| |||||||| | ||| ||| ||||||| | | | | |||||||| |||||| | ||||||    
T  27121805 ctcttcctaaaagttttaacactgttgcatgcttaaagctggattcgaacccagaactttggttaagctagaagagacccgt 27121886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 256479 - 256441
Alignment:
Q  37 tttacacctgcgttagttaactagcgcatgggtattttg 75  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  256479 tttacacttgcgttagttaactaacgcatgggtattttg 256441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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