View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8954_low_2 (Length: 473)
Name: NF8954_low_2
Description: NF8954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8954_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Original strand, 4355365 - 4355809
Alignment:
| Q |
13 |
tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4355365 |
tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttacttctttgccaaaccattaatgatcatggt |
4355464 |
T |
|
| Q |
113 |
ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4355465 |
ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca |
4355564 |
T |
|
| Q |
213 |
tcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatga |
312 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4355565 |
tcatgttagatttctcttcagatgattacaaggtgtttctttttgaaaacccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatga |
4355664 |
T |
|
| Q |
313 |
aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4355665 |
aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattaatgtt |
4355764 |
T |
|
| Q |
413 |
atctcagattgttctcattattttgcaaaacctagccctttttac |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4355765 |
atctcagattgttctcattattttgcaaaacctagccctttttac |
4355809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 13 - 457
Target Start/End: Complemental strand, 4675547 - 4675103
Alignment:
| Q |
13 |
tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4675547 |
tggtgttcctgagaaggttcttagattactatcaaattcaactagtgtcttagcttcaggtaatggtttacttctttgccaaaccattaatgatcatggt |
4675448 |
T |
|
| Q |
113 |
ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4675447 |
ccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaaca |
4675348 |
T |
|
| Q |
213 |
tcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatga |
312 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4675347 |
tcatgttagatttctcttcagatgattacaaggtgtttctttttgaaaacccaatggaatggtcatcaataaattgctatacatgtcgtgtttatcatga |
4675248 |
T |
|
| Q |
313 |
aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacgtgtttcacaacaaagccattcatgtt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
4675247 |
aaaggaaggtgtgtggaaaacaatggataatggtttccttgctggtggaagaaacatgaacttcgacatgaacttgtttcacaacaaagccatttatgtt |
4675148 |
T |
|
| Q |
413 |
atctcagattgttctcattattttgcaaaacctagccctttttac |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4675147 |
atctcagattgttctcattattttgcaaaacctagccctttttac |
4675103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 41 - 348
Target Start/End: Original strand, 38248980 - 38249284
Alignment:
| Q |
41 |
ctatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaa |
140 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||| | || || | || |||||||||||||||| ||||||||||||||||| | |||||| |
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|
| T |
38248980 |
ctatcaaattcaatttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgacccaattgagtttttcatctgcaatccag |
38249079 |
T |
|
| Q |
141 |
tcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcatta |
240 |
Q |
| |
|
|||| |||| | |||||| |||||||||||| ||||||||||||||||| ||| || || || ||||||| || ||||||||||||||| |||| | || |
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|
| T |
38249080 |
tcacaaagtcttggtcttccattcctacccccgagtcacttcaaagaaaccatagttctggtagtataaacctcgtgttagattgctctttagatgacta |
38249179 |
T |
|
| Q |
241 |
caaagtgtttctttttgaaaacccaatggaatggtcatcaaaaaattgctatacatgtcgtgtttatcatgaaaaggaaggtgtgtggaaaacaatggat |
340 |
Q |
| |
|
||| ||||||||||||||||| ||| ||||||||| | || ||| ||||||||| ||||||| ||| |||||||||||||||| ||||||||| |
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|
| T |
38249180 |
caagttgtttctttttgaaaacacaagtgaatggtcacc---aacttgttatacatgtagtgtttaccatagcaaggaaggtgtgtggacaacaatggaa |
38249276 |
T |
|
| Q |
341 |
aatggttt |
348 |
Q |
| |
|
| |||||| |
|
|
| T |
38249277 |
agtggttt |
38249284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 38254153 - 38254318
Alignment:
| Q |
97 |
cattaatgatcatggtccaattgagtttttcatatttaatccaatcaccaagtgtaggtctttca-ttcctaccccagagtcacttcaaagaaatcatga |
195 |
Q |
| |
|
|||||||||||||| ||| ||||||||| | |||| ||||||| | || |||| ||||||||| ||||||| || |||||| |||||||||| ||| |
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|
| T |
38254153 |
cattaatgatcatgatccgattgagtttgtaatatgtaatccagttactaagtcctggtctttcacttcctactcctgagtcatttcaaagaaaccatag |
38254252 |
T |
|
| Q |
196 |
ttttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaac |
262 |
Q |
| |
|
||||| | ||||||| |||| |||| |||||||| |||| | ||||| ||||||||||| |||||| |
|
|
| T |
38254253 |
ttttgttggtataaacctcatattag-ttgctctttagatgactacaaggtgtttcttttggaaaac |
38254318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 20656362 - 20656262
Alignment:
| Q |
162 |
ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa |
261 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| ||||||| |||||||| ||||||||||||||| || |||| | ||||| ||||||||||| ||||| |
|
|
| T |
20656362 |
ttcctacccctgagtcatttcaaagaaatcatagttttgctgatataaacctcatgttagattgctatttagatgactacaaggtgtttcttttggaaaa |
20656263 |
T |
|
| Q |
262 |
c |
262 |
Q |
| |
|
| |
|
|
| T |
20656262 |
c |
20656262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 12036293 - 12036193
Alignment:
| Q |
162 |
ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa |
261 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||| ||||||| |||||||| ||||||||||||||||| |||| | | ||| |||||||| || ||||| |
|
|
| T |
12036293 |
ttcctaccccggagtcatttcaaagaaaccatagttttgctgatataaacctcatgttagattgctctatagatgactgcaaggtgtttctgttggaaaa |
12036194 |
T |
|
| Q |
262 |
c |
262 |
Q |
| |
|
| |
|
|
| T |
12036193 |
c |
12036193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 12036463 - 12036517
Alignment:
| Q |
196 |
ttttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgttt |
250 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||| |
|
|
| T |
12036463 |
ttttgcttatataaacctcatgttagattgctctttagatgattacaaggtgttt |
12036517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 255
Target Start/End: Original strand, 20656623 - 20656837
Alignment:
| Q |
41 |
ctatcaaattcaactagtgtcttagcttcaggtaatggtttgcttctttgccaaaccattaatgatcatggtccaattgagtttttcatatttaatccaa |
140 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| | || || | || |||||||||||||||| | ||||||||| | || ||||||| |
|
|
| T |
20656623 |
ctatcaaattcagtttgtgtcttagcttctagtaatggtctagttgttggtcacaccattaatgatcatgatttgattgagtttggaaaatgtaatccag |
20656722 |
T |
|
| Q |
141 |
tcaccaagtgtaggtctttcattcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcatta |
240 |
Q |
| |
|
| || |||| | |||||| |||| |||| ||||| |||||||||| ||| ||||||| |||||||| |||| ||||||||||||| |||| | || |
|
|
| T |
20656723 |
ttacaaagtcttggtcttcacttcccacccgttagtcatttcaaagaaaccatagttttgctgatataaacctcattttagattgctctttagatgacta |
20656822 |
T |
|
| Q |
241 |
caaagtgtttctttt |
255 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
20656823 |
caagatgtttctttt |
20656837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 22177165 - 22177265
Alignment:
| Q |
162 |
ttcctaccccagagtcacttcaaagaaatcatgattttgctaatataaacatcatgttagattgctcttcagatcattacaaagtgtttctttttgaaaa |
261 |
Q |
| |
|
||||||| || |||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||| |||| | | ||| ||||||||||| ||||| |
|
|
| T |
22177165 |
ttcctactcctgagtcatttcaaagaaatcatagttttgctggtataaacctcatgttagattgctctttagatgacttcaacgtgtttcttttggaaaa |
22177264 |
T |
|
| Q |
262 |
c |
262 |
Q |
| |
|
| |
|
|
| T |
22177265 |
c |
22177265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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