View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8954_low_3 (Length: 413)
Name: NF8954_low_3
Description: NF8954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8954_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 156 - 410
Target Start/End: Original strand, 8517712 - 8517965
Alignment:
| Q |
156 |
atttgttgaaattaacatgctttgccagcaacacaaccaagaggtcctgcattgcttgttaatgaagtcaccatggaagccttagcagcaataatatttt |
255 |
Q |
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| T |
8517712 |
atttgttgaaattaacatgctttgccagcaacacaaccaagaggtcctgcattgcttgttaatgaagtcaccatggaggccttagcagcaataatatttt |
8517811 |
T |
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| Q |
256 |
gagattgtgaatataacggatcacaagttccagttccagatgaattnnnnnnnngcaccatttatgaattcatccccataactcctccaattccaatttg |
355 |
Q |
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| T |
8517812 |
gagattgtgaatataacggatcacaagttccagttccagatgaatt-aaaaaaagcaccatttatgaattcatccccataactcctccaattccaatttg |
8517910 |
T |
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| Q |
356 |
tccatttctcattagtttctctcttggtaacctgtcacagtttaacaccaaactc |
410 |
Q |
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| T |
8517911 |
tccatttctcattagtttctctcttggtaacctgtcacagtttaataccatactc |
8517965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 8517573 - 8517666
Alignment:
| Q |
17 |
acatttaaggtgaacaaatataataaactaataaacagagcaaatcaacttcttattcgcacgagatactaaattcgtacaggcttcaagactt |
110 |
Q |
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| T |
8517573 |
acatttaaggtgaacaaatataataaactaataaacagagcaaatcaacttcttattcgcacgagatactaaattcgtacaggcttcaagactt |
8517666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 156 - 394
Target Start/End: Original strand, 8525572 - 8525809
Alignment:
| Q |
156 |
atttgttgaaattaacatgctttgccagcaacacaaccaagaggtcctgcattgcttgttaatgaagtcaccatggaagccttagcagcaataatatttt |
255 |
Q |
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| T |
8525572 |
atttggtgaaattaacatgctttgtcagcaacacaatcaagaggtcctgcgttgagtgttaataaaggcaccatggatgccttagcagcaacaaagtttt |
8525671 |
T |
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| Q |
256 |
gagattgtgaatataacggatcacaagttccagttccagatgaattnnnnnnnngcaccatttatgaattcatccccataactcctccaattccaatttg |
355 |
Q |
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| T |
8525672 |
gagatgatgaatataatggggtacaacttccataaccagatg-gtacaaaataagcaccatttaagaattcatctccataagtcctccatttccaatttt |
8525770 |
T |
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| Q |
356 |
tccatttctcattagtttctctcttggtaacctgtcaca |
394 |
Q |
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| T |
8525771 |
tccattttccatcggtttctctctttgtaacctgccaca |
8525809 |
T |
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