View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8954_low_4 (Length: 406)
Name: NF8954_low_4
Description: NF8954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8954_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 39488346 - 39488723
Alignment:
| Q |
12 |
tgttccaacacaggttaacttaactcaatggatgatgaaatggttatctaattctaatgcccaagc-actcaactctttagtctatctctatggaccatc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
39488346 |
tgttccaacacaggttaacttaactcaatggatgatgaaatggttatctaattctaatgcccaagctactcaactctttagtctatttctatggaccatc |
39488445 |
T |
|
| Q |
111 |
tggaaaatgcggaatgacgcagtgttcaacaagcgactacttaatgtggtgtgtgccgcccaaaatgtatctattatggctgatgagtttaacttagctt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39488446 |
tggaaaatgcggaatgacgcagtgttcaacaagcgaccacttaatgtggtgtgtgccgcccaaaatgtctctattatggctgatgagtttaacttagctt |
39488545 |
T |
|
| Q |
211 |
gtaatctgttttttgagtctgatgagatgcatgaaaccataaatgttgggagtgatacttggttaccggcgcaagcgggttttgttaaggtgaacattga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39488546 |
gtaatctgttttttgagtctgatgagatgcatgaaaccataaatgttgggagtgatacttggttaccggcgcaagcgggttctgttaaggtgaacattga |
39488645 |
T |
|
| Q |
311 |
tgctggctgttttaaagataactacacgtgttggggtttaataagtagggaccatgaaggtgtcgtacaagttgcagc |
388 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39488646 |
tgctggctgttttaaagataactacacttgttggggtttaatcagtagggaccatgaaggtgtcgtacaagttgcagc |
39488723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Original strand, 46034468 - 46034845
Alignment:
| Q |
12 |
tgttccaacacaggttaacttaactcaatggatgatgaaatggttatctaattctaatgcccaagc-actcaactctttagtctatctctatggaccatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
46034468 |
tgttccaacacaggttaacttaactcaatggatgatgaaatggttatctaattctaatgcccaagctactcaactctttagtctatctctatggaccatc |
46034567 |
T |
|
| Q |
111 |
tggaaaatgcggaatgacgcagtgttcaacaagcgactacttaatgtggtgtgtgccgcccaaaatgtatctattatggctgatgagtttaacttagctt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46034568 |
tggaaaatgcggaatgacgcagtgttcaacaagcgaccacttaatgtggtgtgtgccgcccaaaatgtctctattatggctgatgagtttaacttagctt |
46034667 |
T |
|
| Q |
211 |
gtaatctgttttttgagtctgatgagatgcatgaaaccataaatgttgggagtgatacttggttaccggcgcaagcgggttttgttaaggtgaacattga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
46034668 |
gtaatctgttttttgagtctgatgagatgcatgaaaccataaatgttgggagtgatacttggttaccggcgcaagcgggttctgttaaggtggacattga |
46034767 |
T |
|
| Q |
311 |
tgctggctgttttaaagataactacacgtgttggggtttaataagtagggaccatgaaggtgtcgtacaagttgcagc |
388 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
46034768 |
tgctggctgttttaaagataactacacttgttggggtttaatcagtagggaccatgaaggtgtcgtacaagttgcagc |
46034845 |
T |
|
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