View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8954_low_6 (Length: 390)
Name: NF8954_low_6
Description: NF8954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8954_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35593846 - 35593748
Alignment:
| Q |
1 |
gatcaggtgattgcaagttcattcctcaggcacctcctgaaggacctccggtaactactccttcccatac-tttttaaccgtcgcttttgcagaaaaat |
98 |
Q |
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| T |
35593846 |
gatcaggtgattgcaagttcattcctcaggcacctcctgaaggacctccggtaactactcccttcgatacatttttaaccgtcgcttttgaagaaaaat |
35593748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35567939 - 35567842
Alignment:
| Q |
1 |
gatcaggtgattgcaagttcattcctcaggcacctcctgaaggacctccggtaactactccttcccatac-tttttaaccgtcgcttttgcagaaaaa |
97 |
Q |
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| T |
35567939 |
gatcaggtgattgcaagttcattcctcaggcacctcctgaaggacctccggtaactactcccttcgatacatttttaaccgtcgcttttgaagaaaaa |
35567842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35582670 - 35582573
Alignment:
| Q |
1 |
gatcaggtgattgcaagttcattcctcaggcacctcctgaaggacctccggtaactactccttcccatac-tttttaaccgtcgcttttgcagaaaaa |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||||||||||| ||||||| |
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| T |
35582670 |
gatcaggtgattgcaagttcattcctcaggcacctcctgaaggacctccggtaactactcccttcgatacatttttaaccgtcgcttttgaagaaaaa |
35582573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 35567272 - 35567195
Alignment:
| Q |
297 |
tgtttgttttgttatcatactatcctcaattacttttgcataaactttttctttttcagattcatacatctaaaaaag |
374 |
Q |
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| T |
35567272 |
tgtttgctttgttatcatgctatcctcatttagttttgcataaactttttctttttcagattcatacgtccaaaaaag |
35567195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 35581999 - 35581923
Alignment:
| Q |
297 |
tgtttgttttgttatcatactatcctcaattacttttgcataaactttttctttttcagattcatacatctaaaaaag |
374 |
Q |
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|||||||||||||||| | ||||||||| ||| ||||||| |||||||||| ||||||||||||||| || ||||||| |
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| T |
35581999 |
tgtttgttttgttatcttgctatcctcatttagttttgcaaaaactttttc-ttttcagattcatacgtccaaaaaag |
35581923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 8751316 - 8751288
Alignment:
| Q |
165 |
tagttaaaggaccaaaaatgcaatttagt |
193 |
Q |
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| T |
8751316 |
tagttaaaggaccaaaaatgcaatttagt |
8751288 |
T |
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