View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8954_low_7 (Length: 321)
Name: NF8954_low_7
Description: NF8954
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8954_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 305
Target Start/End: Complemental strand, 42551249 - 42550960
Alignment:
| Q |
16 |
ataataaaaccaaccaaatatacctcaaagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcat |
115 |
Q |
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| T |
42551249 |
ataataaaaccaaccaaatatacctcaaagcctacccttttgctcaaagactacctccgagatgacctaagctcatgttcatcaagcgggttcaaatcat |
42551150 |
T |
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| Q |
116 |
tcccacgaagacaatgctgcaccaccgttggattccaacacaagaagagcaacggtacttcactccctcgacgacgcgtaagggctctccagagagcttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42551149 |
tcccacgaagacaatgctgcaccaccgttggattccaacacaagaagaacaacggtacttcactccctcgtcgacgcgtaagggctctccagagagcttc |
42551050 |
T |
|
| Q |
216 |
tgaagcagtaataactgccataaagtcattgtcctcacaaaagagtgctaaaacaaagaaagcttccactggtgttctttctaggagctt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42551049 |
tgaagcagtaataactgccataaagtcattgtcctcacaaaagagtgctaaaacaaagaaaacttccactggtgttctttctaggagctt |
42550960 |
T |
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