View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_high_3 (Length: 407)
Name: NF8955_high_3
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38317276 - 38317496
Alignment:
| Q |
1 |
aagagaatagagaccccgacacatgtatagaatgaaatacaatacaagtagatgtagcataaaatcatgaagaagttagttactaatgcaccgtaggtgg |
100 |
Q |
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| T |
38317276 |
aagagaatagagaccccgacacatgtatagaatgaaatacaatacaagtagatgt---ataaaatcatgaaga----agttactaatgcaccgtaggcgg |
38317368 |
T |
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| Q |
101 |
cattgtttactctcacacacaatcattggc------ctagaagagaactgatcaaggaagatgctcaattctattgtatttgaataacctcccaattgaa |
194 |
Q |
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| T |
38317369 |
cattgtttactctcacacacaatcattggcctagaactagaagagaactgatcaaggaagatgctcaattctattgtatttgaataacctcccaattgaa |
38317468 |
T |
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| Q |
195 |
agaaataaaaataataggagagattggt |
222 |
Q |
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| T |
38317469 |
agaaataaaaataataggagagattggt |
38317496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 392
Target Start/End: Original strand, 38317491 - 38317537
Alignment:
| Q |
346 |
attggtcaatcaattacgagtaaaaaatctcacgtgtacttttatgt |
392 |
Q |
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| T |
38317491 |
attggtcaatcaattacgagtaaaaaatctcacgtgtacttttatgt |
38317537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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