View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_high_5 (Length: 314)
Name: NF8955_high_5
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 2330795 - 2331087
Alignment:
| Q |
10 |
ttggtgttggagagaaatgatagcttggaagacagaaaaatggtgatagggtcaaagcctcctgcttgtttaaataagtgcatgaattgtaggccttgta |
109 |
Q |
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| T |
2330795 |
ttggtgttggagagaaatgatagcttgcaagacagaaaaatggtgatagggtcaaagcctcctgcttgtttaaataagtgcatgaattgtaggccttgta |
2330894 |
T |
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| Q |
110 |
tagcaactttggttgtttcacaaaaacgaaagagttacaaagtgttatctcgtggggatgataatgatacttattaccttctagcatggaaatgtagatg |
209 |
Q |
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| T |
2330895 |
tagcaactttggttgtttcacaaaaacgaaagagttacaaagtgttatctcgtggggatgataatgatacttattaccttctagcatggaaatgtagatg |
2330994 |
T |
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| Q |
210 |
tgggaataaggtgtttcaaccttaattgaatattgatagcagcaacatttgtcaccatta---attattcctacatatgtatttagtggaggg |
299 |
Q |
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| T |
2330995 |
tgggaataaggtgtttcaaccttaattgattattgctagcatcactatttgtcaccattaattattattcctacatatatatttagtagaggg |
2331087 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 44682177 - 44682213
Alignment:
| Q |
194 |
catggaaatgtagatgtgggaataaggtgtttcaacc |
230 |
Q |
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| T |
44682177 |
catggaaatgcagatgtgggaataagttgtttcaacc |
44682213 |
T |
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