View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_high_9 (Length: 249)
Name: NF8955_high_9
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_high_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 5395792 - 5396030
Alignment:
| Q |
11 |
cagagacaatgacttcttcttcttcctcaaagaacaaatcctctgtcttcctaaacacaccatgtgccaccacaaccacagtggcaacactaaccgcaac |
110 |
Q |
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| T |
5395792 |
cagaaacaatgacttcttcttcttcctcaaagaacaaatcctctgtcttcctaaacacaccatgtgccaccacaaccacagtggcaacactaaccgcaac |
5395891 |
T |
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| Q |
111 |
aacaatattaacagtagcttgcgtaagaagcaacaaagccaccgtaacaaacgccatgagaacaaccacaattcgatcatcaacaagccgaccccataaa |
210 |
Q |
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| T |
5395892 |
aacaatattaacagtagcttgcgtaagaagcaacaaagccaccgtaacaaacgccatgagaacaaccacaattcgatcatcaacaagccgaccccataaa |
5395991 |
T |
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| Q |
211 |
atcaccggctgatcacggaggaagtagaagaacaaccat |
249 |
Q |
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| T |
5395992 |
atcaccggctgatcacggaggaagtagaagaacaaccat |
5396030 |
T |
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