View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8955_low_1 (Length: 651)
Name: NF8955_low_1
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 538; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 26 - 637
Target Start/End: Original strand, 1094704 - 1095312
Alignment:
| Q |
26 |
cagactgatggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcatt |
125 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1094704 |
cagactgatggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcatt |
1094803 |
T |
|
| Q |
126 |
atactcacaaccattgctcattggatcagtagtatcatgattcatgagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgcttaatt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1094804 |
atactcacaaccattgctcattggatcagtagtatcat-------gagtacttgctcaagtagagaatttcggttttaattgatgcttgcttgcttaatt |
1094896 |
T |
|
| Q |
226 |
aggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttatcaagtaaatatgg |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1094897 |
aggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatggagtttatggtttaaatttttaacaagtaaatatgg |
1094996 |
T |
|
| Q |
326 |
ggtggatggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttgattttct |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1094997 |
ggtggatggggttttttatagggtgtaatctagattcatcttggtggaaaaactaatgttgagtacagatagtggtggtgttcctggtagttggttttct |
1095096 |
T |
|
| Q |
426 |
aaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtgggtgatcagagaaatttttatggataaactcaagcaatctt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1095097 |
aaccgcatgccaaaagtagttggaaatggtatatatactttattttggtttgatttgtgggtgatcagagaaatttttatggat--actcaagcaatctt |
1095194 |
T |
|
| Q |
526 |
tttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatatt |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1095195 |
tttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggctacatggaccggaggttgcataaaaatatt |
1095294 |
T |
|
| Q |
620 |
ttcatttgggagaataat |
637 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
1095295 |
ttcatttgggaggataat |
1095312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 191 - 637
Target Start/End: Original strand, 1116295 - 1116749
Alignment:
| Q |
191 |
aatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtgtgaatgg |
290 |
Q |
| |
|
||||| ||||||| ||||||||||| | ||||||| ||| |||||||| ||||||| |||||||||||||||| ||| || ||||||| | ||||||| | |
|
|
| T |
1116295 |
aattttggttttagttgatgcttgccttcttaattgggtcccaaaggtgaatattgattttgttggagaagtggtgttggtgaatgagcgatgtgaatag |
1116394 |
T |
|
| Q |
291 |
agtttatggtttaaatttttatcaagtaaatatggggtgga-tggggttttttatagggtgtaatctagattcatcttgttggaaaaactaatgttgagt |
389 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||| ||| | |||||||||| | | |||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
1116395 |
agttaatggtttaaattttaatcaagtaaatatggagtgaaatggggtttttcacaaggtgtaatctagattcatcttggtgggaaaactaacgttgagt |
1116494 |
T |
|
| Q |
390 |
acagatagtggtggt---gttcctggtagttgattttctaaccgcatgccaaaagtagttggaaatggtatatatacattattttggtttgatttgtggg |
486 |
Q |
| |
|
| |||| |||||||| |||||||||| ||| |||||||| ||| || ||||||| ||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
1116495 |
aaagatggtggtggtaatgttcctggtatttggttttctaatcgcttgtcaaaagtggttggaaatggtatagatactttattttggtttgatttgtggg |
1116594 |
T |
|
| Q |
487 |
tgatcagagaaatttttatggataaactcaagcaatctttttagtttatttatcaattaataaacaagcatttgtggaagatatgttgaatgtgagtgga |
586 |
Q |
| |
|
|| | |||||| |||||||||||||| || ||||||||||||| ||| |||||||||||||||| | |||||| |||||| |||||| |||||||| |
|
|
| T |
1116595 |
tggttggagaaacatttatggataaacttaaccaatctttttagtatatctatcaattaataaacaggtgtttgtgaaagataagttgaa--tgagtgga |
1116692 |
T |
|
| Q |
587 |
ggtttag------gcgaccggaggttgcataaaaatattttcatttgggagaataat |
637 |
Q |
| |
|
|||| || ||| ||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
1116693 |
ggttcagatgacttggactggaggctgcataaaaatattttcctttgggaggataat |
1116749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 184 - 404
Target Start/End: Original strand, 1097869 - 1098087
Alignment:
| Q |
184 |
agtagagaatttcggttttaattgatgcttgcttgcttaattaggttccaaaggtaaatattgcttttgttggagaagtgatgtaggagaatgaggggtg |
283 |
Q |
| |
|
|||||| ||||| || || |||| || ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| |||| || | |
|
|
| T |
1097869 |
agtagacaattttggcttaaatttatacttgcttgcttaattgggttccaaaggtaaatattgctttt-ttggagaagtggtgttggaggata-----ta |
1097962 |
T |
|
| Q |
284 |
tgaatggagtttatggtttaaatttttatcaagtaaatatggggtgg---atggggttttttatagggtgtaatctagattcatctt-gttggaaaaact |
379 |
Q |
| |
|
||||| ||||||| ||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||| || ||||||||| |
|
|
| T |
1097963 |
tgaatagagtttacggtttaaatacttatgaagtaaatatggggtggataatggggttttttgcttggtgtaatctagatttatcttggtgggaaaaact |
1098062 |
T |
|
| Q |
380 |
aatgttgagtacagatagtggtggt |
404 |
Q |
| |
|
||||||||||| |||| |||||||| |
|
|
| T |
1098063 |
aatgttgagtaaagatggtggtggt |
1098087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 1090976 - 1091076
Alignment:
| Q |
32 |
gatggattgaatgtttggtttttcttcttctttttgtaacgttcgggtaatggagatttaacgagacaattaatagtggtatttgattgtcattatactc |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
1090976 |
gatggattgaatgtttggtttttcttcttctttctgtaacgttctggcaatggagatttaaggagaca---aatagtggtacttgattgtcattatactc |
1091072 |
T |
|
| Q |
132 |
acaa |
135 |
Q |
| |
|
|||| |
|
|
| T |
1091073 |
acaa |
1091076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 543 - 598
Target Start/End: Original strand, 1098162 - 1098216
Alignment:
| Q |
543 |
ttaataaacaagcatttgtggaagatatgttgaatgtgagtggaggtttaggcgac |
598 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1098162 |
ttaataaacaggcatttgtggaagatatgttgaatgtga-tggaggtttaggcgac |
1098216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 557 - 628
Target Start/End: Original strand, 1121176 - 1121253
Alignment:
| Q |
557 |
tttgtggaagatatgttgaatgtgagtggaggtttaggc------gaccggaggttgcataaaaatattttcatttgg |
628 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
1121176 |
tttgtggaagatatgttgaatgtgagtggaggtttaggcgacatggactggaggatgcataaaaatattttcctttgg |
1121253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 538 - 592
Target Start/End: Original strand, 8115592 - 8115646
Alignment:
| Q |
538 |
atcaattaataaacaagcatttgtggaagatatgttgaatgtgagtggaggttta |
592 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8115592 |
atcaattaataaacaggtgtttgtggaagatatgttgaatgtgagtggaggttta |
8115646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University