View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_low_13 (Length: 304)
Name: NF8955_low_13
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 179881 - 179612
Alignment:
| Q |
12 |
tggtgttgttaagcttcaagaaaatctgataccatataagagtttgaatataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgta |
110 |
Q |
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| T |
179881 |
tggtgctgttaagcttcaagaaaatctgataccatataagagtttgaatataagagttg---------ttgtattgaattatgtattgctgatacatgta |
179791 |
T |
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| Q |
111 |
tttaagtacaacgatatgcctcgacattaagagataactacctagcttattttatggtaacaactttatctacaaacaaacagctgtgcaattcaaattt |
210 |
Q |
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| T |
179790 |
tttaagtacaacgatatgccttagcattaagagataactacctagcttattttatggtaacaactttatctacaaacaaacagctatgcaattcaaattt |
179691 |
T |
|
| Q |
211 |
gaaataataactagagatatgtattgagtgtatgacagatcactatccttaacattaagattattttgttggtctaaca |
289 |
Q |
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| T |
179690 |
gaaataataacaagagatatgtattgagcgtatgacagatcactatccttaacgttaggattattttgttggtgtaaca |
179612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 59 - 281
Target Start/End: Complemental strand, 1700235 - 1700025
Alignment:
| Q |
59 |
atataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagct |
157 |
Q |
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||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
1700235 |
atataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagct |
1700136 |
T |
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| Q |
158 |
tattttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatc |
257 |
Q |
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| T |
1700135 |
tattttatggtaacagctttatctaca----aacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatc |
1700049 |
T |
|
| Q |
258 |
cttaacattaagattattttgttg |
281 |
Q |
| |
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| T |
1700048 |
cttaacattaggattattttgttg |
1700025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 60 - 281
Target Start/End: Complemental strand, 1704652 - 1704443
Alignment:
| Q |
60 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
158 |
Q |
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|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
1704652 |
tataagagtttgaatggcaattgtttttaattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
1704553 |
T |
|
| Q |
159 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
258 |
Q |
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| T |
1704552 |
attttatggtaacagctttatctaca----aacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatcc |
1704466 |
T |
|
| Q |
259 |
ttaacattaagattattttgttg |
281 |
Q |
| |
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| T |
1704465 |
ttaacattaggattattttgttg |
1704443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 60 - 281
Target Start/End: Original strand, 20613285 - 20613493
Alignment:
| Q |
60 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
158 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
20613285 |
tataagagtttgaatggcaattgttttta-ttatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
20613383 |
T |
|
| Q |
159 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
258 |
Q |
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| T |
20613384 |
attatatggtaacagctttatct----acaaacagctgtgcaattcaaatttgaaataataacaagagata---------tgtatgacagatcactatcc |
20613470 |
T |
|
| Q |
259 |
ttaacattaagattattttgttg |
281 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
20613471 |
ttaacattaggattattttgttg |
20613493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 1700262 - 1700220
Alignment:
| Q |
18 |
tgttaagcttcaagaaaatctgataccatataagagtttgaat |
60 |
Q |
| |
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| T |
1700262 |
tgttaagcttcaagaaaatctgataccatataagagtttgaat |
1700220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 289
Target Start/End: Original strand, 20625212 - 20625258
Alignment:
| Q |
243 |
tgacagatcactatccttaacattaagattattttgttggtctaaca |
289 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20625212 |
tgacagatcactatccttaacattaggattattttgttggtctaaca |
20625258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 60 - 292
Target Start/End: Original strand, 35919911 - 35920128
Alignment:
| Q |
60 |
tataagagtttgaatggcaattgtattcaattatgtattg-tgatacatgtatttaagtacaacgatatgcctcgacattaagagataactacctagctt |
158 |
Q |
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|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
35919911 |
tataagagtttgaatggcaattgtttt-aattatgtattgctgatacatgtatttaagtacaacgatatgccttggcattaagagataactacctagctt |
35920009 |
T |
|
| Q |
159 |
attttatggtaacaactttatctacaaacaaacagctgtgcaattcaaatttgaaataataactagagatatgtattgagtgtatgacagatcactatcc |
258 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
35920010 |
attctatggtaacaactttatct----acaaacagctgtgcaattcaaatttgaaataataac--gagata---------tgtatgacagatcactatcc |
35920094 |
T |
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| Q |
259 |
ttaacattaagattattttgttggtctaacaata |
292 |
Q |
| |
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||||||||| |||||||||||||||||||||||| |
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| T |
35920095 |
ttaacattaggattattttgttggtctaacaata |
35920128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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