View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_low_16 (Length: 282)
Name: NF8955_low_16
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 125 - 264
Target Start/End: Complemental strand, 34721565 - 34721426
Alignment:
| Q |
125 |
tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa |
224 |
Q |
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| T |
34721565 |
tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa |
34721466 |
T |
|
| Q |
225 |
gtttgggaacaagacaatggccaagtttctttacaacaac |
264 |
Q |
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| T |
34721465 |
gtttgggaacaagacaatggccaagtttctttacaacaac |
34721426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 34727989 - 34727740
Alignment:
| Q |
15 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
114 |
Q |
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| T |
34727989 |
acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc |
34727890 |
T |
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| Q |
115 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
214 |
Q |
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| T |
34727889 |
ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa |
34727790 |
T |
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| Q |
215 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
264 |
Q |
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| T |
34727789 |
tgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac |
34727740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 264
Target Start/End: Original strand, 18928737 - 18928986
Alignment:
| Q |
15 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
114 |
Q |
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| T |
18928737 |
acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc |
18928836 |
T |
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| Q |
115 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
214 |
Q |
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| T |
18928837 |
ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa |
18928936 |
T |
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| Q |
215 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
264 |
Q |
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| T |
18928937 |
tgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac |
18928986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 34716114 - 34715870
Alignment:
| Q |
19 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg |
118 |
Q |
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||||||| ||||| |||||||| || ||||| |||||||||| |||||| |||||| | ||| | | | ||| |||| || |||| |||||||||| |
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| T |
34716114 |
acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg |
34716015 |
T |
|
| Q |
119 |
gatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaagggaatttcctcctaaat |
215 |
Q |
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| T |
34716014 |
gatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaaggagcttcctcttaaat |
34715915 |
T |
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| Q |
216 |
gtcggggaagtttgggaacaagacaatggccaagtttctttacaa |
260 |
Q |
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| T |
34715914 |
gtcggtgaagtttggaaacaagataatggcgaagtttctttacaa |
34715870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
| Q |
203 |
tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
264 |
Q |
| |
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| T |
34730959 |
tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac |
34730898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
| Q |
16 |
cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct |
115 |
Q |
| |
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|||||||||| |||| |||||||| || | ||| |||||| ||| ||||||||||||| | || || ||||| |||| ||| || |||||||| | |
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| T |
34717871 |
cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat |
34717772 |
T |
|
| Q |
116 |
tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa |
176 |
Q |
| |
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||||||||| ||| ||||||||| | ||||||||||||||||||||| |||||||||| |
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| T |
34717771 |
tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa |
34717711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 18924027 - 18924080
Alignment:
| Q |
211 |
taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
264 |
Q |
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| T |
18924027 |
taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaac |
18924080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 34735746 - 34735497
Alignment:
| Q |
15 |
acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc |
114 |
Q |
| |
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| T |
34735746 |
acagacttatttgttgcggaccatccggtgggggtaaagtctcgtgttcaagatatcattcaactattgaacagtcaagaatcaaaatcccctttactgc |
34735647 |
T |
|
| Q |
115 |
ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa |
214 |
Q |
| |
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| || |||| ||| |||||||||||| |||||||| ||||||||| | ||||||||||| | | |||| |||| | || |||||||| ||| |
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| T |
34735646 |
tcggagtatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcatcacgattttgaggcgaagagtttcctcccaaa |
34735547 |
T |
|
| Q |
215 |
tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac |
264 |
Q |
| |
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|||| ||||||| ||||||||||| |||||| ||||||| ||||||||| |
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| T |
34735546 |
tgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaac |
34735497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
| Q |
19 |
acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt |
74 |
Q |
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| T |
18923835 |
acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt |
18923890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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