View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_low_19 (Length: 267)
Name: NF8955_low_19
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 6112593 - 6112846
Alignment:
| Q |
1 |
ctatatataaccttgcaggaacatcaggacaccatatatagtttaacatgcagcaaactccaaaggatccataatccatatatgtggcaaacttttgact |
100 |
Q |
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| T |
6112593 |
ctatatataaccttgcaggaacatcaggacaccatatatagtttaacatgcagcaaactccaaaggatccataatccatatatgtggcaaacttttgact |
6112692 |
T |
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| Q |
101 |
aagatgtgaacgttaatctactcctaagtcctaacatattcaacagtttaaaacaaacaaaactttcctttattttgaattcatatcaaatgctttatac |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6112693 |
aagatgtgaacgttaatctac-------tcctaacatattcaatagtttaaaacaaacaaaactttcctttattttgaattcatatcaaatgctttatac |
6112785 |
T |
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| Q |
201 |
caaaatcctcacaaagagaacggtttattaagttaaatcatgttagaaatgatgtccatct |
261 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
6112786 |
caaaatcctcacaaagagaacagtttattaagttaaatcatgttagaaatgatgttcatct |
6112846 |
T |
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