View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_low_20 (Length: 253)
Name: NF8955_low_20
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 5013488 - 5013619
Alignment:
| Q |
20 |
tttggcctaagggcctctcctcttattaaaaaggaatcatttgaaaga--aaatgtaaattaatcgcaagatattttgttaataatattttaacagcgag |
117 |
Q |
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| T |
5013488 |
tttggcctaaggacctctcctcttattaaaaaggaatcatttgaaagacaaaatgtaaattaatcgcaagatattttgttaataatattttaacagcgag |
5013587 |
T |
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| Q |
118 |
aagaattatcccgactcgatcacgaatgaaaa |
149 |
Q |
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| T |
5013588 |
aagaattatcccgactcgatcacgaatgaaaa |
5013619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 5013754 - 5013824
Alignment:
| Q |
147 |
aaatatcatttttcatattttaaatacggtagaattagttaaga-cttttttatactttgtaacaccaaac |
216 |
Q |
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| T |
5013754 |
aaatagcatttttcatattttaaatgcggtagaattagttaagattttttttatactttgtatcaccaaac |
5013824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 24255088 - 24255127
Alignment:
| Q |
110 |
acagcgagaagaattatcccgactcgatcacgaatgaaaa |
149 |
Q |
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| T |
24255088 |
acagcgagaagaattatcccgactcaatcacgaatgaaaa |
24255127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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