View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8955_low_23 (Length: 243)

Name: NF8955_low_23
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8955_low_23
NF8955_low_23
[»] chr4 (8 HSPs)
chr4 (74-235)||(2917456-2917616)
chr4 (15-81)||(2918008-2918074)
chr4 (110-223)||(10396123-10396235)
chr4 (110-225)||(10396408-10396522)
chr4 (119-225)||(11197227-11197332)
chr4 (110-175)||(53468099-53468163)
chr4 (186-225)||(6975506-6975545)
chr4 (110-216)||(34946466-34946570)
[»] chr7 (2 HSPs)
chr7 (110-225)||(27597977-27598091)
chr7 (171-225)||(21416193-21416247)
[»] chr2 (4 HSPs)
chr2 (110-225)||(28226329-28226443)
chr2 (110-225)||(28226647-28226760)
chr2 (110-225)||(30219933-30220047)
chr2 (110-230)||(13792541-13792660)
[»] chr3 (2 HSPs)
chr3 (110-225)||(53595952-53596066)
chr3 (110-225)||(53596267-53596381)
[»] chr8 (1 HSPs)
chr8 (135-216)||(3670860-3670940)
[»] chr5 (2 HSPs)
chr5 (110-223)||(13042988-13043100)
chr5 (110-223)||(13112984-13113096)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 74 - 235
Target Start/End: Complemental strand, 2917616 - 2917456
Alignment:
Q  74 attacgatgatggaaagaagatcaatatttaatacggttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaata 173  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2917616 attacgatgatggaaagaagatcattatttaatacggttggaaatcaagtctgagtgatgatgtctcacgtcgacta-taaatggagtaaatgttgaata 2917518  T
Q  174 tacaagagaagagactcataaatccattatcttagggttttgggtaagagtgcgatgatgtc 235  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||    
T  2917517 tacaagagaagagactcataaatccactatcttagggttttggctaagagtgtgatgatgtc 2917456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 2918074 - 2918008
Alignment:
Q  15 atgttatttgttgttgaacgtgattgttttaaggagaaatgagacttttaaaatgagttattacgat 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2918074 atgttatttgttgttgaacgtgattgttttaaggagaaatgagacttttaaaatgagttattacgat 2918008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 10396123 - 10396235
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| |||||||| ||||||||| ||||| |  |||||||| |||||||||||||| ||||||  |||| |||||| |||||  ||||||    
T  10396123 gttggaaatcaagtgtgagtgattatgtctcacatcgacaag-aaatggaggaaatgttgaatatataagagagaagacccataaacccattgccttagg 10396221  T
Q  210 gttttgggtaagag 223  Q
    ||||| ||||||||    
T  10396222 gttttaggtaagag 10396235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 10396408 - 10396522
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| |||||||| ||||||||  | |||||  |||||||| |||||||| ||||| |||||| ||||| |||||| |||||  ||||||    
T  10396408 gttggaaatcaagtgtgagtgattatgtctcatattgactag-aaatggaggaaatgttggatatataagagaggagacccataaacccattgccttagg 10396506  T
Q  210 gttttgggtaagagtg 225  Q
    ||||||| ||||||||    
T  10396507 gttttggataagagtg 10396522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 11197227 - 11197332
Alignment:
Q  119 caagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagggttttgggt 218  Q
    ||||| |||||||| ||| ||||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| |||||| |||||  |||||||||||||||    
T  11197227 caagtgtgagtgattatgcctcacatcgactag-aaatggaggaaacgttggatatataagagaggagacccataaacccattgccttagggttttgggt 11197325  T
Q  219 aagagtg 225  Q
    |||||||    
T  11197326 aagagtg 11197332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 53468163 - 53468099
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatata 175  Q
    |||||||||||||| |||||||| ||||||||| |||| ||  |||||||| ||||||||||||||    
T  53468163 gttggaaatcaagtgtgagtgataatgtctcacatcgatta-gaaatggagcaaatgttgaatata 53468099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 225
Target Start/End: Complemental strand, 6975545 - 6975506
Alignment:
Q  186 gactcataaatccattatcttagggttttgggtaagagtg 225  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  6975545 gactcataaatccattatcttaagattttgggtaagagtg 6975506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 216
Target Start/End: Complemental strand, 34946570 - 34946466
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| || ||||| ||||||||| |||||||  |||||||| ||| |||| ||||  |||||||||||| |||||| |   | |||||||    
T  34946570 gttggaaatcaagtgtg-gtgataatgtctcacatcgactag-aaatggagcaaacgttggatatttaagagaagagacccataaacctgatgtcttagg 34946473  T
Q  210 gttttgg 216  Q
    |||||||    
T  34946472 gttttgg 34946466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 27597977 - 27598091
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| |||||||| ||||||||| |||||||| |||| ||| ||| |||| ||||| |||||| ||||| |||||| ||||| |||||||    
T  27597977 gttggaaatcaagtgtgagtgataatgtctcacatcgactat-aaattgagcaaacgttggatatataagagaggagacccataaacccattgtcttagg 27598075  T
Q  210 gttttgggtaagagtg 225  Q
    |||||| |||||||||    
T  27598076 gttttgcgtaagagtg 27598091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 21416247 - 21416193
Alignment:
Q  171 atatacaagagaagagactcataaatccattatcttagggttttgggtaagagtg 225  Q
    ||||| |||||| ||||| |||||| |||||  ||||||||||||||||||||||    
T  21416247 atatataagagaggagacccataaacccattgccttagggttttgggtaagagtg 21416193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 28226329 - 28226443
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| |||||| | ||||| ||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| ||||||  |||| |||||||    
T  28226329 gttggaaatcaagtgtgagtgttaatgtcccacatcgactag-aaatggaggaaacgttggatatataagagaggagacccataaacacattgtcttagg 28226427  T
Q  210 gttttgggtaagagtg 225  Q
    ||||| ||||||||||    
T  28226428 gttttaggtaagagtg 28226443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 28226647 - 28226760
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| ||| |||| || || ||| ||||| |  |||||| | |||| ||| ||||| |||||| |||||||||||| ||||| ||||| |    
T  28226647 gttggaaatcaagtgtgactgataatatcacacatcgacaag-aaatggggcaaatattggatatataagagaggagactcataaacccattgtctta-g 28226744  T
Q  210 gttttgggtaagagtg 225  Q
    ||||| ||||||||||    
T  28226745 gtttttggtaagagtg 28226760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 30220047 - 30219933
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| |||| ||| ||||| ||| |||||||  || ||||| |||||||| |||   |||||| ||||| |||||| | ||| |||||||    
T  30220047 gttggaaatcaagtgtgagcgattatgtcccacatcgactag-aactggaggaaatgttggatacttaagagaggagacccataaaccaattgtcttagg 30219949  T
Q  210 gttttgggtaagagtg 225  Q
    |||||| ||| |||||    
T  30219948 gttttgtgtaggagtg 30219933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 13792660 - 13792541
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||| |||||||| ||||| ||| || ||||  |||||||| |||| ||  ||||| |||||| ||||| | || | |||||  |||  |    
T  13792660 gttggaaatcaagtgtgagtgattatgtcccacatcaacta-gaaatggaggaaatatttgatatataagagaggagacccgtacacccattgacttgag 13792562  T
Q  210 gttttgggtaagagtgcgatg 230  Q
    |||||||||||||||| ||||    
T  13792561 gttttgggtaagagtgtgatg 13792541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 53595952 - 53596066
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    ||||||||||||||  ||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||| |||||| ||||| |||||| || ||| |||| |    
T  53595952 gttggaaatcaagtgcgagtgattatgtcccacattgactag-aaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaag 53596050  T
Q  210 gttttgggtaagagtg 225  Q
    ||||||||||||||||    
T  53596051 gttttgggtaagagtg 53596066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 225
Target Start/End: Original strand, 53596267 - 53596381
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    ||||||||||||||  ||||||| ||||| ||| | |||||  |||| ||| |||||||| ||||| |||||| ||||| |||||| || ||| |||| |    
T  53596267 gttggaaatcaagtgcgagtgattatgtcccacattgactag-aaatagagaaaatgttggatatataagagaggagacccataaacccgttaccttaag 53596365  T
Q  210 gttttgggtaagagtg 225  Q
    ||||||||||||||||    
T  53596366 gttttgggtaagagtg 53596381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 3670940 - 3670860
Alignment:
Q  135 tgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagggttttgg 216  Q
    |||||||| |||||||  |||||||| ||| |||| ||||| |||||| ||||| |||||||||| || |||||||||||||    
T  3670940 tgtctcacatcgactag-aaatggaggaaacgttggatatataagagatgagacccataaatccactaccttagggttttgg 3670860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 13042988 - 13043100
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||  |||||||| || || ||| |||||||  |||| ||| |||  ||| ||||| |||||| ||||| |||||| |||| ||||||||    
T  13042988 gttggaaatcaagagtgagtgataatctcccacatcgactag-aaatagagcaaacattggatatataagagaggagacccataaacccatcatcttagg 13043086  T
Q  210 gttttgggtaagag 223  Q
     |||||||||||||    
T  13043087 attttgggtaagag 13043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 223
Target Start/End: Original strand, 13112984 - 13113096
Alignment:
Q  110 gttggaaatcaagtctgagtgatgatgtctcacgtcgactattaaatggagtaaatgttgaatatacaagagaagagactcataaatccattatcttagg 209  Q
    |||||||||||||  |||||||| || || ||| |||||||  |||| ||| |||  ||| ||||| |||||| ||||| |||||| |||| ||||||||    
T  13112984 gttggaaatcaagagtgagtgataatctcccacatcgactag-aaatagagcaaacattggatatataagagaggagacccataaacccatcatcttagg 13113082  T
Q  210 gttttgggtaagag 223  Q
     |||||||||||||    
T  13113083 attttgggtaagag 13113096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University