View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_low_24 (Length: 241)
Name: NF8955_low_24
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 50743509 - 50743713
Alignment:
| Q |
18 |
tgttgaaactgaggaacccatggacttaacagacgtgcctgaactggactccacagaagtaggtgtaggtaaagacctggattcttggttagacattgat |
117 |
Q |
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| T |
50743509 |
tgttgaaactgaggaacccatggacttaacagacgtgcctgaactggactccacagaagtaggtgtaggtaaagacctggattcttggttagacattgat |
50743608 |
T |
|
| Q |
118 |
gtggatgctatacaagatgatgaggttgcggtgggcctagacatacctatggacgatttgtccatggttctgtgaagattaatgcaggatattatacatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50743609 |
gtggatgctatacaagatgatgaggttgcggtgggcctagacatacctatggacgatttgtccatggttctgtgaagattaatgcaggatattatacatc |
50743708 |
T |
|
| Q |
218 |
cctat |
222 |
Q |
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||||| |
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| T |
50743709 |
cctat |
50743713 |
T |
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