View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8955_low_4 (Length: 549)

Name: NF8955_low_4
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8955_low_4
NF8955_low_4
[»] chr7 (6 HSPs)
chr7 (242-537)||(32299449-32299744)
chr7 (196-244)||(32299730-32299778)
chr7 (80-131)||(32304499-32304551)
chr7 (18-52)||(32304546-32304580)
chr7 (242-284)||(6532165-6532207)
chr7 (257-285)||(6532148-6532176)
[»] chr5 (3 HSPs)
chr5 (342-386)||(11334984-11335028)
chr5 (257-285)||(9511932-9511960)
chr5 (205-241)||(11335312-11335348)
[»] chr1 (1 HSPs)
chr1 (242-276)||(28840204-28840238)
[»] scaffold0007 (1 HSPs)
scaffold0007 (257-285)||(14718-14746)
[»] chr6 (3 HSPs)
chr6 (257-285)||(9291199-9291227)
chr6 (248-284)||(18981378-18981413)
chr6 (257-285)||(18984145-18984173)
[»] chr2 (1 HSPs)
chr2 (257-285)||(38583954-38583982)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 242 - 537
Target Start/End: Complemental strand, 32299744 - 32299449
Alignment:
Q  242 ttgcacttctccttgttgattcttctgattgattgcacttctccttannnnnnnnnnnaattgattgcatttgaattctccttgttttttcttctaattg 341  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||| ||||    
T  32299744 ttgcacttctccttgttaattcttctgattgattgcacttctccttatttatttttctaattgattgcatttgaattctccttgttttttcttctgattg 32299645  T
Q  342 attgcacatctccttattgattcttttgtttggttgctcctctctccaatgacattactttttcccttcaaagactatgatgaatttgtgctcgccaatc 441  Q
    ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32299644 attgcacctctccttattgattcttctatttggttgctcctctctccaatgacattactttttcccttcaaagactataatgaatttgtgctcgccaatc 32299545  T
Q  442 actttcttcttgtgttccacgtcgtatcaatgaaggttccatttttgacgctaccatagtttgttgataactctctaatcccaaccatgatgtcca 537  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  32299544 actttcttcttgtgttccacgtcgtaccaatgaagcttccatctttgacgctaccagagtttgttgataactctctaatcccaaccatcatgtcca 32299449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 32299778 - 32299730
Alignment:
Q  196 cacttctctctattgactcttctgaatgattgcattgcacttctccttg 244  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  32299778 cacttccctctattgactcttctgaatgtttgcattgcacttctccttg 32299730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 32304551 - 32304499
Alignment:
Q  80 ctctttgcatgatttcccttctctc-ttgattcttctaactggttgcattgca 131  Q
    |||||||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  32304551 ctctttgcatgatttcacttctctcgttgattcttctaattggttgcattgca 32304499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 32304580 - 32304546
Alignment:
Q  18 gctttttcatggtttgaaacatttgttctctcttt 52  Q
    |||||||||||||||||||||||||||||||||||    
T  32304580 gctttttcatggtttgaaacatttgttctctcttt 32304546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 6532165 - 6532207
Alignment:
Q  242 ttgcacttctccttgttgattcttctgattgattgcacttctc 284  Q
    |||||||||||| | ||||||||||||||||| ||||||||||    
T  6532165 ttgcacttctccctattgattcttctgattgactgcacttctc 6532207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 6532148 - 6532176
Alignment:
Q  257 ttgattcttctgattgattgcacttctcc 285  Q
    |||||||||||||||||||||||||||||    
T  6532148 ttgattcttctgattgattgcacttctcc 6532176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 386
Target Start/End: Complemental strand, 11335028 - 11334984
Alignment:
Q  342 attgcacatctccttattgattcttttgtttggttgctcctctct 386  Q
    ||||||| |||||||||||||| || |||||||||||||||||||    
T  11335028 attgcacttctccttattgatttttctgtttggttgctcctctct 11334984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 9511932 - 9511960
Alignment:
Q  257 ttgattcttctgattgattgcacttctcc 285  Q
    |||||||||||||||||||||||||||||    
T  9511932 ttgattcttctgattgattgcacttctcc 9511960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 11335348 - 11335312
Alignment:
Q  205 ctattgactcttctgaatgattgcattgcacttctcc 241  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  11335348 ctattgattcttctgattgattgcattgcacttctcc 11335312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 28840238 - 28840204
Alignment:
Q  242 ttgcacttctccttgttgattcttctgattgattg 276  Q
    |||||||||||||| ||||||||||||||||||||    
T  28840238 ttgcacttctccttattgattcttctgattgattg 28840204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 14746 - 14718
Alignment:
Q  257 ttgattcttctgattgattgcacttctcc 285  Q
    |||||||||||||||||||||||||||||    
T  14746 ttgattcttctgattgattgcacttctcc 14718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 9291227 - 9291199
Alignment:
Q  257 ttgattcttctgattgattgcacttctcc 285  Q
    |||||||||||||||||||||||||||||    
T  9291227 ttgattcttctgattgattgcacttctcc 9291199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 18981378 - 18981413
Alignment:
Q  248 ttctccttgttgattcttctgattgattgcacttctc 284  Q
    |||||||| ||||||||||||||||||||||||||||    
T  18981378 ttctcctt-ttgattcttctgattgattgcacttctc 18981413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 18984145 - 18984173
Alignment:
Q  257 ttgattcttctgattgattgcacttctcc 285  Q
    |||||||||||||||||||||||||||||    
T  18984145 ttgattcttctgattgattgcacttctcc 18984173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 38583982 - 38583954
Alignment:
Q  257 ttgattcttctgattgattgcacttctcc 285  Q
    |||||||||||||||||||||||||||||    
T  38583982 ttgattcttctgattgattgcacttctcc 38583954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University