View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8955_low_5 (Length: 433)
Name: NF8955_low_5
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_5 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 34500092 - 34499667
Alignment:
| Q |
1 |
tttttgaaaatcagttggttccttccctgccaaagacgccagagggtgattccaaaaaactggacagctagagtatcatcattccttagccattgttcca |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34500092 |
tttttgaaaactagttggttccttccctgccaaagacgccagagggtgattccaaaaaactggacagctagagtatcatcattccttagccatagttcca |
34499993 |
T |
|
| Q |
101 |
tccaatctctacacacggcgctgggaggtatatgaatgccaagaggagatgagaaccaaaccgctttcccagccgagcagtgcaaaaagagatggttcct |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34499992 |
tccaatctctacacacagcgctgggaggtatatgaatgccaagaggagatgagaaccaaaccgctttcgcagccgagcagtgcaaaaagagatggttcct |
34499893 |
T |
|
| Q |
201 |
atcttcaacaccagaattacagagggggcaagtagtgtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttcctagcctc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34499892 |
atcttcaacaccagaattacagagggggcaagtagtgtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttgctagcctc |
34499793 |
T |
|
| Q |
301 |
caaaggaagttttgcgcgcttctagggccgttgaatttccagattctgctccagacctccgtatcacgcacagaagatgtctcagccatctctttggatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34499792 |
caaaggaagttttgcgcgcttctagggccgttgaatttctagattctgctccagacctccgtatcacgcacagtagatgtctcagccatctctttggatt |
34499693 |
T |
|
| Q |
401 |
tggtctcgcaaagcaaatgatgtcca |
426 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
34499692 |
tggtctcgcaaagcaaatgatgtcca |
34499667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 8367591 - 8367925
Alignment:
| Q |
7 |
aaaatcagttggttccttccctgccaaagacgccagagggtgattccaaaaaactggacagctagagtatcatcattccttagccattgttccatccaat |
106 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||| ||||| || ||||||| |||||||||||||| ||||| ||| | | ||| |||||||||| | |
|
|
| T |
8367591 |
aaaatcaattggttccttccctgccacaaccgccaaagggtaataccaaaaacctggacagctagagggtcatccttcttcaaccaaagttccatccact |
8367690 |
T |
|
| Q |
107 |
ctctacacacggcgctgggaggtatatgaatgccaagaggagatgagaaccaaaccgctttcccagccgagcagtgcaaaaagagatggttcctatcttc |
206 |
Q |
| |
|
||||||||| | ||||||| |||||||| ||||| |||||||| |||||||| |||||| |||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
8367691 |
ctctacacatactgttgggaggaatatgaattccaagtggagatgaaaaccaaacagctttcgcagccggacagtgcaaaaagagatgattcaaatcttc |
8367790 |
T |
|
| Q |
207 |
aacaccagaattacagagggggcaagtagtgtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttcctagcctccaaagg |
306 |
Q |
| |
|
| |||||| ||||| || ||||| | ||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | |||| ||||||| |
|
|
| T |
8367791 |
cagaccagagttacaaagagggcacgattggtccagagatataccttttttactgagattacatctggtagggagaatgttgctagcaagccgccaaagg |
8367890 |
T |
|
| Q |
307 |
aagttttgcgcgcttctagggccgttgaatttcca |
341 |
Q |
| |
|
|| ||||| ||||| || || || ||||| ||||| |
|
|
| T |
8367891 |
aaattttgggcgctcctgggaccattgaaattcca |
8367925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 199079 - 199419
Alignment:
| Q |
1 |
tttttgaaaatcagttggttccttccctgccaaagacgccagagggtgattccaaaaaactggacagctagagtatcatcattccttagccattgttcca |
100 |
Q |
| |
|
||||| ||||||| ||| |||||||||||||| | ||||| ||||| || |||||||||||||||||||||| ||||| ||| | | || |||||| |
|
|
| T |
199079 |
tttttaaaaatcaattgattccttccctgccacaaccgccaaagggtaataccaaaaaactggacagctagagggtcatccttcttcaaccgaagttcca |
199178 |
T |
|
| Q |
101 |
tccaatctctacacacggcgctgggaggtatatgaatgccaagaggagatgagaaccaaaccgctttcccagccgagcagtgcaaaaagagatggttcct |
200 |
Q |
| |
|
||| |||||||||| | ||||||| |||||||| ||||| |||||||| |||||||| || ||| |||||| ||||||||||||||||||||| |
|
|
| T |
199179 |
gccactctctacacatactgttgggaggaatatgaattccaagtggagatgaaaaccaaacagccttcgcagccggacagtgcaaaaagagatggttcaa |
199278 |
T |
|
| Q |
201 |
atcttcaacaccagaattacagagggggcaagtagtgtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttcctagcctc |
300 |
Q |
| |
|
|||||| | ||||| ||||| || ||| | || |||||||| ||||| ||||| |||||||||||||||||||| ||| | ||||| | |||| | |
|
|
| T |
199279 |
atcttccagtccagagttacaaagagggaaggtttggtccagagttataccatttttgctgagattacatctggtagggagactgttgctagcaagccgc |
199378 |
T |
|
| Q |
301 |
caaaggaagttttgcgcgcttctagggccgttgaatttcca |
341 |
Q |
| |
|
|||||||| |||||| |||| || || || ||||| ||||| |
|
|
| T |
199379 |
caaaggaaattttgcacgctcctgggaccattgaaattcca |
199419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University