View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8955_low_9 (Length: 404)
Name: NF8955_low_9
Description: NF8955
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8955_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 10128194 - 10128526
Alignment:
| Q |
18 |
tctccataacaaactgaaatttccagaactttgggtgtgaacgtttcattccataactatacaatgaagcactatctatcaagttaaatctaattctagc |
117 |
Q |
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| T |
10128194 |
tctccataacaaactgaaatttccagaactttgg-tgtgaacgtttcattccataaccatacaatgaagcactatctatcaagttaaatctcattctagc |
10128292 |
T |
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| Q |
118 |
tgagctgcttagtactcaacacgatttcggaatcaaatcaacataatggattgtatcttagtactctacgcgatttatacataaaatataagactaaatt |
217 |
Q |
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| T |
10128293 |
tgagctgcttagtactcaacacgatttcggaatcgaatcaacataatggattgtatcttagtactctacgcgatttatacataaaatataagactaaatt |
10128392 |
T |
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| Q |
218 |
acctattattactagattgtaagaaattaatggatcataacaactttgctattcgttattgtttccaaatagtaacagaaacttcactttgacatcctat |
317 |
Q |
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| T |
10128393 |
acctattattactagattgtaagaaattaatggatactaacaactttgctattcgttattg-taccaaatagtaacagaaacttcactttgacatcctct |
10128491 |
T |
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| Q |
318 |
gttatcatccgatgttgcttcctgagcaagagtga |
352 |
Q |
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| T |
10128492 |
gttatcatccgatgttgcttcctgagcaagagtga |
10128526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 40777084 - 40777199
Alignment:
| Q |
18 |
tctccataacaaactgaaatttccagaactttgggtgtgaacgtttcattccataactatacaatgaagcactatctatcaagttaaatctaattctagc |
117 |
Q |
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| T |
40777084 |
tctccataacaaattcaaatttccagaactttgg-tgtgaacgcttcattccataaccatacaaggaagcactatccataaggtttaagccaattctagc |
40777182 |
T |
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| Q |
118 |
tgagctgcttagtactc |
134 |
Q |
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| T |
40777183 |
tgaactgcttagtactc |
40777199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 40764457 - 40764562
Alignment:
| Q |
17 |
ttctccataacaaactgaaatttccagaactttgggtgtgaacgtttcattccataactatacaatgaagcactatctatcaagttaaatctaattctag |
116 |
Q |
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|||||||||||||||| ||| ||||| ||||| || ||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| |||||| |
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| T |
40764457 |
ttctccataacaaactcaaaattccataacttcgg-tgtgaacgtttcatttcata--tatacaatgaaacactatctatcaagttaaatcctattctaa |
40764553 |
T |
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| Q |
117 |
ctgagctgc |
125 |
Q |
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| T |
40764554 |
ccgagctgc |
40764562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 40770385 - 40770459
Alignment:
| Q |
19 |
ctccataacaaactgaaatttccagaactttgggtgtgaacgtttcattccataactatacaatgaagcactatct |
94 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| ||||||| || ||| |||||| |||||||||||| |
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| T |
40770385 |
ctccataacaaactgaaatttccagaacttt-ggtgtaaacttttcatttcaaaaccatacaaggaagcactatct |
40770459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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