View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8956_high_1 (Length: 541)
Name: NF8956_high_1
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8956_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 6 - 526
Target Start/End: Original strand, 4246560 - 4247080
Alignment:
| Q |
6 |
agacccaaatggaaataactcaatcaagatcttatccaagaagtacccaggtcaaaaaggaaatgaaagaagcttaaagaatttccattttgaaccaaaa |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4246560 |
agacccaaatggaaataactcaatcaagatcttatccaagaagtacccaagtcaaaaaagaaatgaaagaagcttaaagaatttccattttgaaccaaaa |
4246659 |
T |
|
| Q |
106 |
ctcaaagactgtgttcgcgctacttttgaactcaagcacgaagatttggataggataaagcaaagggtgctatcatcatgggaaacattcgatacaagaa |
205 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
4246660 |
ctcaaagactgtgttcgcgctacttttgaactcaaacacgaagatttggataagataaagcaaagggtgttatcaacatgggaaacattcgatacaagag |
4246759 |
T |
|
| Q |
206 |
aatcaaagccacaaaatatatcatcgtttgtcctcgcttgtgcttattctctagtttgtcttgcgaaagcaatccacgaagttcaaaattataaagagaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4246760 |
aatcaaagccacaaaatatatcatcgtttgtcctcgcttgtgcttattcgctagtttgtcttgcgaaagcaatccacgaagttcaaaattataaagagaa |
4246859 |
T |
|
| Q |
306 |
gtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcatttcattgatgca |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4246860 |
gtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcatttcattgatgca |
4246959 |
T |
|
| Q |
406 |
caaccgttagattttataaaagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttcttgaagagg |
505 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4246960 |
caaccgttagattttataaaagaagatggtgtttctttagttgctaaaagtatttatgagaaaataaagatgataaatgaaaagggttttcttgaagagg |
4247059 |
T |
|
| Q |
506 |
ctattgatgatgtgtataata |
526 |
Q |
| |
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||||||||||||||||||||| |
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| T |
4247060 |
ctattgatgatgtgtataata |
4247080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 59 - 502
Target Start/End: Original strand, 4251048 - 4251491
Alignment:
| Q |
59 |
aaaaaggaaatgaaagaagcttaaagaatttccattttgaaccaaaactcaaagactgtgttcgcgctacttttgaactcaagcacgaagatttggatag |
158 |
Q |
| |
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||||||||||||| ||||||||||||| ||||| ||||||||| ||||| |||||| |||||| ||||||||| | ||||| || ||||||||||||| |
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| T |
4251048 |
aaaaaggaaatgatagaagcttaaagattttcccatttgaaccacaactcgaagactctgttcgtgctacttttaagctcaaacatgaagatttggataa |
4251147 |
T |
|
| Q |
159 |
gataaagcaaagggtgctatcatcatgggaaacattcgatacaagaaaatcaaagccacaaaatatatcatcgtttgtcctcgcttgtgcttattctcta |
258 |
Q |
| |
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|||||||||||| ||| |||| ||||||||| ||||||||| | | ||||||||||||||| | ||||||| |||||| || ||||||||||||| || |
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|
| T |
4251148 |
gataaagcaaagagtgttatctacatgggaaatattcgatacgaaagaatcaaagccacaaactctatcatcatttgtcatcacttgtgcttattcgctc |
4251247 |
T |
|
| Q |
259 |
gtttgtcttgcgaaagcaatccacgaagttcaaaattataaagagaagtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccaccaatag |
358 |
Q |
| |
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|||||| |||| ||||| || || | | ||| ||| | |||||||||||| ||||||||| |||||||| || |||||||| ||||| ||||| |
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| T |
4251248 |
gtttgtgttgcaaaagcgattcatggggctcataatgacaaagagaagttttcttttgtgttcagcgtagattgcagagcaaggttagaaccaacaatac |
4251347 |
T |
|
| Q |
359 |
caaataactatattggaaactgtatttgggggcatttcattgatgcacaaccgttagattttataaaagaagatggtgtttctttagttgctaagagtat |
458 |
Q |
| |
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||||||||||| ||||||||||| |||||| | |||| |||||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4251348 |
caaataactatcttggaaactgtgtttgggcgtattttattgatacacagccgttggattttataaaagaagatggtgtttttttagttgctaagagtat |
4251447 |
T |
|
| Q |
459 |
ttatgagaaaataaagatgataaatgaaaagggttttcttgaag |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4251448 |
ttatgagaaaataaagatgataaatgaaaagggttttcttgaag |
4251491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 59 - 500
Target Start/End: Original strand, 4234032 - 4234479
Alignment:
| Q |
59 |
aaaaaggaaatgaaagaagcttaaagaatttccattttgaaccaaaactcaaagactgtgttcgcgctacttttgaactcaagcacgaagatttggatag |
158 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| | |||||||||||||||| |||||| |||||| |||| || | |||| | ||||||||| ||| |
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| T |
4234032 |
aaaaaggaaatgaaagaagcttgaagattttaccttttgaaccaaaactcgaagactatgttcgttctacattcaagctcacacgtgaagatttgaataa |
4234131 |
T |
|
| Q |
159 |
gataaagcaaagggtgctatcatcatgggaaacattcgatacaa--gaa--aa--tcaaagccacaaaatatatcatcgtttgtcctcgcttgtgcttat |
252 |
Q |
| |
|
||||||||||| ||| ||||| ||||||| ||| || || | ||| || || ||||||| || | ||||||| ||||| ||| |||||||||| |
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|
| T |
4234132 |
gataaagcaaatggtattatcaaaatgggaattattggacacgaatgaattaacttctaagccaccaactttatcatcttttgttctcacttgtgcttac |
4234231 |
T |
|
| Q |
253 |
tctctagtttgtcttgcgaaagcaatccacgaagttcaaaattataaagagaagtttggttttgtgtttgctgtagattgtaggacaaggttaaaaccac |
352 |
Q |
| |
|
|| || |||||| | || |||||||| || | |||| |||| | |||||||||||||| |||| || | |||||||| || |||||||| | |||| |
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| T |
4234232 |
tcgcttgtttgtttggcaaaagcaattcatggagttgaaaaggagaaagagaagtttgggtttgcattcaccgtagattgcagagcaaggttagagccac |
4234331 |
T |
|
| Q |
353 |
caatagcaaataactatattggaaactgtatttgggggcatttcattgatgcacaaccgttagattttataaaagaagatggtgtttctttagttgctaa |
452 |
Q |
| |
|
|| || ||||||||||| |||||||||| | ||||| ||||| ||||| || |||| || |||| ||||| |||||||| || | |||||||||||| |
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| T |
4234332 |
cactaccaaataactattttggaaactgcgtatggggacatttagttgatacaaaaccattggattacataaacgaagatggggtgtttttagttgctaa |
4234431 |
T |
|
| Q |
453 |
gagtatttatgagaaaataaagatgataaatgaaaagggttttcttga |
500 |
Q |
| |
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| ||||| |||| ||||||||||||||||||||||||||| ||||||| |
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|
| T |
4234432 |
gtgtattcatgaaaaaataaagatgataaatgaaaagggtgttcttga |
4234479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 325 - 522
Target Start/End: Original strand, 4189672 - 4189869
Alignment:
| Q |
325 |
gtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcatttcattgatgcacaaccgttagattttataa |
424 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| ||| ||||||| ||||||||||| |||||||| | ||||| | |||||||||| ||||| || | |
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|
| T |
4189672 |
gtagattgcagagcaaggttagaaccaccaataccaagtaactattttggaaactgtgtttgggggaacttcatcagtacacaaccgttggatttcatta |
4189771 |
T |
|
| Q |
425 |
aagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttcttgaagaggctattgatgatgtgtat |
522 |
Q |
| |
|
|| |||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || ||| ||||||||| ||||||| |||||| |||| |
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|
| T |
4189772 |
aaaaagacggtgttttcttagttgctaagtgtatttacgagaaaataaagatgataaatgagaacggtgttcttgaaggggctattaatgatgggtat |
4189869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 338 - 485
Target Start/End: Original strand, 4192805 - 4192952
Alignment:
| Q |
338 |
caaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcatttcattgatgcacaaccgttagattttataaaagaagatggtgt |
437 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||| | ||||||||||| ||||| || |||| | | ||||| ||||||||| ||| |
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|
| T |
4192805 |
caaggttagaaccaccaataccaaataactattttggaaactgtgtctgggggcattttgttgatacaaaaccatcgaactttatggaagaagatgatgt |
4192904 |
T |
|
| Q |
438 |
ttctttagttgctaagagtatttatgagaaaataaagatgataaatga |
485 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4192905 |
ttatttagttgctaagtgtattcatgagaaaataaagatgataaatga |
4192952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 325 - 502
Target Start/End: Original strand, 4210640 - 4210817
Alignment:
| Q |
325 |
gtagattgtaggacaaggttaaaaccaccaatagcaaataactatattggaaactgtatttgggggcatttcattgatgcacaaccgttagattttataa |
424 |
Q |
| |
|
|||||||| || |||||||| | ||| || || ||||||||||| ||||||| ||| | ||||| ||||| ||||| || |||| | |||| |||| |
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|
| T |
4210640 |
gtagattgcagagcaaggttagagccatcactaccaaataactattttggaaattgtgtatggggacatttggttgatacaaaaccatcggattacataa |
4210739 |
T |
|
| Q |
425 |
aagaagatggtgtttctttagttgctaagagtatttatgagaaaataaagatgataaatgaaaagggttttcttgaag |
502 |
Q |
| |
|
| |||||||| || | ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4210740 |
atgaagatggggtgtttttagttgctaagtgtattcatgagaaaataaagatgataaatgaaaagggtggtcttgaag |
4210817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 4189555 - 4189611
Alignment:
| Q |
208 |
tcaaagccacaaaatatatcatcgtttgtcctcgcttgtgcttattctctagtttgt |
264 |
Q |
| |
|
||||||||||||| | ||||||| ||||| ||| ||||||||||||| || |||||| |
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|
| T |
4189555 |
tcaaagccacaaactttatcatcttttgttctcacttgtgcttattcactcgtttgt |
4189611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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