View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8956_high_3 (Length: 501)
Name: NF8956_high_3
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8956_high_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 447; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 31184022 - 31184492
Alignment:
| Q |
15 |
gtgttgtgtggtgttggaatttcaatttatattttttgtcgaagaaaaccacgaaaggaagaaagccaaactgaagaaaaagcacaaaggggagtgctat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |
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|
| T |
31184022 |
gtgttgtgtggtgttggaatttcaatttatattttttgtcgaagaaaaccacgaaaggaaaaaagccaaactgaagaaaaagcccaaaggggaatgctat |
31184121 |
T |
|
| Q |
115 |
tttcaaattggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatgacaaatatctcattggagttggaagtcaagg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31184122 |
tttcaaattggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatgacaaatatctcattggagttggaagtcaagg |
31184221 |
T |
|
| Q |
215 |
aaatgtttataaggcagagttgtccagcggttcggttggtgccatctatgctgtgaagaagcttcatttagtaacagatgaagtaatgtcaaagtctttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
31184222 |
aaatgtttataaggcagagttgtccagcggttcggttggtgccatctatgctgtgaagaagcttcatttagtaacagatgatgaaatgtcaaagtctttt |
31184321 |
T |
|
| Q |
315 |
acgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31184322 |
acgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagt |
31184421 |
T |
|
| Q |
415 |
tcatggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaag |
485 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31184422 |
tcatggaaggtggaagcttagatcaaataataaacaatgaaaaacaagccattgcatttgattgggaaaag |
31184492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 485
Target Start/End: Original strand, 31102939 - 31103412
Alignment:
| Q |
15 |
gtgttgtgtggtgttggaatttcaatttatattttttgtcgaagaaaaccacgaaaggaagaaagccaaactgaagaaaaagcacaaaggggagtgctat |
114 |
Q |
| |
|
|||||| |||| ||||||||||| || ||| |||||| ||| |||||| || ||| ||||||| ||||||||||||| ||| ||||| |||||| |||| |
|
|
| T |
31102939 |
gtgttgagtggagttggaatttcgatgtatgttttttttcggagaaaaaaaccaaatgaagaaatccaaactgaagaagaagtacaaaagggagtactat |
31103038 |
T |
|
| Q |
115 |
tttcaaattggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatgacaaatatctcattggagttggaagtcaagg |
214 |
Q |
| |
|
|||| | |||||| |||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31103039 |
tttcgatttggagccatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatgacaaatatctcattggagttggaagtcaagg |
31103138 |
T |
|
| Q |
215 |
aaatgtttataaggcagagttgtccagcggttcggttggtgccatctatgctgtgaagaagcttcatttagtaacagatgaagtaatgtca--------- |
305 |
Q |
| |
|
||||||||| |||||||||||| | | || | ||||| ||| ||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
31103139 |
aaatgtttacaaggcagagttgcctacaggattggttgttgc---------tgtgaagaagcttcatttagtaagagatgaagaaatgtcatttttcagt |
31103229 |
T |
|
| Q |
306 |
---aagtcttttacgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttt |
402 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| || ||||| |||| |||| |||||||||||||||||||| |
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|
| T |
31103230 |
tcgaagtcttttacgagtgagattgaaaccttgacaggaatcaaacacaggaatatcataaagcttcatggattttgctcacattctaagttctcatttt |
31103329 |
T |
|
| Q |
403 |
tggtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaag |
485 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31103330 |
tagtttacaagttcatggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaag |
31103412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 31140301 - 31140771
Alignment:
| Q |
18 |
ttgtgtggtgttggaatttcaatttatattttttgtcgaagaaaaccacgaaaggaagaaagccaaactgaagaaaaagcacaaaggggagtgctatttt |
117 |
Q |
| |
|
|||| ||||||||||||||| || |||| ||| ||||||||||| | ||| ||| ||| ||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
31140301 |
ttgtttggtgttggaatttcgatgtatactttgggtcgaagaaaaaaatcaaatgaaaaaaaccaaactgaagaacaaacacaaaggggagtactatttt |
31140400 |
T |
|
| Q |
118 |
caaattggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatgacaaatatctcattggagttggaagtcaaggaaa |
217 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31140401 |
ccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatgacaaatatctcattggagttggaagtcaaggaaa |
31140500 |
T |
|
| Q |
218 |
tgtttataaggcagagttgtccagcggttcggttggtgccatctatgctgtgaagaagcttcatttagtaacagatgaagtaatgtca------------ |
305 |
Q |
| |
|
|||||| ||||||||||| || ||| ||||| ||||||||||||||| ||| || |||||||||||| ||| ||| |
|
|
| T |
31140501 |
tgtttacaaggcagagttatcttcaggtatggttg---------ttgctgtgaagaagctacatataataacagatgaagaaatctcacatttcagttcg |
31140591 |
T |
|
| Q |
306 |
aagtcttttacgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttgg |
405 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||| || ||||| |||| |||| ||||||||| ||||||||||||| |
|
|
| T |
31140592 |
aagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggattttgctcacattctaaattctcatttttgg |
31140691 |
T |
|
| Q |
406 |
tttacaagttcatggaaggtggaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaag |
485 |
Q |
| |
|
||||||||||| ||||||| |||||||||| |||||| ||||||| ||| | |||||||| ||||||||||||||||||| |
|
|
| T |
31140692 |
tttacaagttcttggaaggaggaagcttaggtcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaag |
31140771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 55 - 485
Target Start/End: Original strand, 31058538 - 31058968
Alignment:
| Q |
55 |
gaagaaaaccacgaaaggaagaaagccaaactgaagaaaaagcacaaaggggagtgctattttcaaattggagtcatgatgggaaaatgacgtttgaaag |
154 |
Q |
| |
|
|||||||| || ||| |||||||| |||||||||||| | || |||||||| |||||||| | ||||||||||||||| ||||||| |||||||| |
|
|
| T |
31058538 |
gaagaaaaaaaccaaatgaagaaagtcaaactgaagaa---gtgcagaggggagtactattttccatttggagtcatgatggaaaaatgatgtttgaaaa |
31058634 |
T |
|
| Q |
155 |
tattattcaagctactgagaattttgatgacaaatatctcattggagttggaagtcaaggaaatgtttataaggcagagttgtccagcggttcggttggt |
254 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||| || |||| ||||| | |
|
|
| T |
31058635 |
tattattgaagctactgcaaattttgatgacaaatatctcgttggagtcggaagtcaaggaaatgtttacaaggcagagttatcagaaggtttggttgtt |
31058734 |
T |
|
| Q |
255 |
gccatctatgctgtgaagaagcttcatttagtaacagatgaagtaatgtca------------aagtcttttacgagtgagattgaaacattgagaggaa |
342 |
Q |
| |
|
|| |||||||||||| ||| ||||||||||||||| ||||||| |||||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
31058735 |
gc---------tgtgaagaagctacatctagtaacagatgaagaaatgtcatgtttcagttcaaagtcttttatgagtgagattgaaaccttgacaggaa |
31058825 |
T |
|
| Q |
343 |
tcaaacacaggaacatcatcaaccttcaaggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttagatcaaat |
442 |
Q |
| |
|
| ||||| ||||||||||| || ||||| |||| |||| ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31058826 |
ttaaacataggaacatcataaaacttcatggattttgctcacattctaaattctcgtttttggtttacaagttcttggaaggtggaagcttagatcaaat |
31058925 |
T |
|
| Q |
443 |
actaaacaatgaaaaacaagccattgcatttgattgggaaaag |
485 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||||||| |
|
|
| T |
31058926 |
actaaacaatgacacacaagccgttgcatttgattgggaaaag |
31058968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 31153319 - 31153533
Alignment:
| Q |
18 |
ttgtgtggtgttggaatttcaatttatattttttgtcgaagaaaaccacgaaaggaagaaagccaaactgaagaaaaagcacaaaggggagtgctatttt |
117 |
Q |
| |
|
|||| ||||||||||||||| || |||| ||| |||||||||||| | ||| ||| | | |||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
31153319 |
ttgtttggtgttggaatttcgatgtatactttgtgtcgaagaaaaaaatcaaatgaaaaga-ccaaactgaaacaaa--cacaaaggggagtactatttt |
31153415 |
T |
|
| Q |
118 |
caaattggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatgacaaatatctcattggagttggaagtcaaggaaa |
217 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31153416 |
ccatttggagtcatgatgggaaaatgatgtttgaaaatatcattgaagctactgagaattttgatgacaaatatctcattggagttggaagtcaaggaaa |
31153515 |
T |
|
| Q |
218 |
tgtttataaggcagagtt |
235 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
31153516 |
tgtttacaaggcagagtt |
31153533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 485
Target Start/End: Original strand, 31216089 - 31216202
Alignment:
| Q |
372 |
ggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttaga-tcaaatactaaacaatgaaaaacaagccattgca |
470 |
Q |
| |
|
|||||||||| |||||| | ||||||||||||||||| |||||| |||||||||||| ||| || |||||| |||||||||| | ||||||||||||| |
|
|
| T |
31216089 |
ggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgacacacaagccattgca |
31216187 |
T |
|
| Q |
471 |
tttgattgggaaaag |
485 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31216188 |
tttgattgggaaaag |
31216202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 380
Target Start/End: Original strand, 31153607 - 31153681
Alignment:
| Q |
306 |
aagtcttttacgagtgagattgaaacattgagaggaatcaaacacaggaacatcatcaaccttcaaggatattgc |
380 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| |||||||| ||||||||||||||| || ||||| |||| |||| |
|
|
| T |
31153607 |
aagtcttttatgagtgagattgaaaccttgtcaggaatcagacacaggaacatcataaagcttcatggattttgc |
31153681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 16173031 - 16173091
Alignment:
| Q |
175 |
attttgatgacaaatatctcattggagttggaagtcaaggaaatgtttataaggcagagtt |
235 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||| |||||| || |||||||| |
|
|
| T |
16173031 |
attttgatgacaaatatcttattggagttggagggcaaggaagtgtttacaaagcagagtt |
16173091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 31215843 - 31215922
Alignment:
| Q |
123 |
tggagtcatgatgggaaaatgacgtttgaaagtattattcaagctactgagaattttgatgacaaatatctcattggagt |
202 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| ||| ||||||| | ||||||||||| |||| ||||||||||| |
|
|
| T |
31215843 |
tggagtcatgatggaaaaatgatgtttgaaaatataattgaagctaccaacaattttgatgatgaatacctcattggagt |
31215922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 485
Target Start/End: Original strand, 31159545 - 31159603
Alignment:
| Q |
427 |
gaagcttagatcaaatactaaacaatgaaaaacaagccattgcatttgattgggaaaag |
485 |
Q |
| |
|
||||||||| |||||| ||||||| ||| | |||||||| ||||||||||||||||||| |
|
|
| T |
31159545 |
gaagcttaggtcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaag |
31159603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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