View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8956_low_1 (Length: 981)

Name: NF8956_low_1
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8956_low_1
NF8956_low_1
[»] chr3 (1 HSPs)
chr3 (16-963)||(37661811-37662777)


Alignment Details
Target: chr3 (Bit Score: 788; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 788; E-Value: 0
Query Start/End: Original strand, 16 - 963
Target Start/End: Original strand, 37661811 - 37662777
Alignment:
16 cagagggaccatggttcaacatttctaactaaagatggttcaggtgaaacatcatagtttgctgcagagaacacaactgttacaccttgttggattgcat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
37661811 cagagggaccatggttcaacatttctaactaaagatggttcaggtgaaacttcatagtttgctgcagagaacacaactgttacaccttgttggattgcat 37661910  T
116 gaaatgaaccaatacttgaaccatctttcaacaaaggcacaacaagtacaattatataactggcacatatatgatccataaatcaaagaaacttgtgttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37661911 gaaatgaaccaatacttgaaccatctttcaacaaaggcacaacaagtacaattatataactggcacatatatgatccataaatcaaagaaacttgtgttt 37662010  T
216 ttcactatttaccctatctaggtgattcacgctcaaaattatctgctgaatttaatggtccatgttcttgttctagaccttctggcttctaggtagtaac 315  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
37662011 ttcactatttaccctatctaggtgattcacactcaaaattatctgctgaatttaatggtccatgttcttgttctagaccttctggcttctagatagtaac 37662110  T
316 aaacatcgaattaacttgttgcatgctttcgtagggctgaatctctcctttccaagttgatggaataggactgatgttagtatcttcctcgaaactctca 415  Q
    || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37662111 aagcatcgaattaacttgttgcatgctttcttagggctgaatctctcctttccaagttgatggaataggactgatgttagtatcttcctcgaaactctca 37662210  T
416 tatttcagccatactctagtgct------------------ttataattactagtacgtagctagtaagtgtggctgcttgtgttgaattgagcattgct 497  Q
    |||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37662211 tatttcagccatactctagtgctttagaagcataagttttcttataattactagtacgtagctagtaagtgtggctgcttgtgttgaattgagcattgct 37662310  T
498 aaaaaccatgagaaac-nnnnnnnnnnnnngagggacatgagaaactatacttatagatatataaattaaactttctggcttctgcatccttttcagtga 596  Q
    ||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37662311 aaaaaccatgagaaacttttttttttttttgagggacatgagaaactatacttatagatatataaattaaactttctggcttctgcatccttttcagtga 37662410  T
597 aatgtagttggtgtaacaaacaatagataattgagtttatgtctgcaaagtcttttnnnnnnnnnnngaaagagtttttgcctgcaaagaaagcttatgc 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||    
37662411 aatgtagttggtgtaacaaacaatagataattgagtttatgtctgcaaagtcttttaaaaaaaaaaaaaaagagtttttgcctgcaaagaaagcttatgc 37662510  T
697 agaaattaaattaagcaaggagtggaattataaaataaaagtgaccaaaatagacccgaaatattgtgaagaaaacaactagtaattaagtgagattatt 796  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
37662511 agaaattaaaataagcaaggagtggaattataaaataaaagtgaccaaaatagacccgaaatattgtgaagaaaacaactactaattaagtgagattatt 37662610  T
797 gaacgaaataaagagaacatttgagattactgttgagaaatcggaatttattgaacgaaataaatagaacataaaagaaattgactccagaaaagaagaa 896  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37662611 gagcgaaataaagagaacatttgagattactgttgagaaatcggaatttattgaacgaaataaatagaacataaaagaaattgactccagaaaagaagaa 37662710  T
897 aataaacagccattttccttggaaaataactttatataattgatgacggattgtttgagaaagtttc 963  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
37662711 aataaacagccattttccttggaaaataactttgtataattgatgacggattgtttgagaaagtttc 37662777  T

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