View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8956_low_11 (Length: 253)
Name: NF8956_low_11
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8956_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 37836179 - 37836407
Alignment:
| Q |
19 |
aattcgacgaatttcagctttacgcaaccatcgatactgtgcttgtaatacaattttctcaatatctgcttcttcccatcatagtattacaattagacat |
118 |
Q |
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| T |
37836179 |
aattcgacgaatttcagctttacgcaaccatcgatactgtgcttgtaatacaattttctcaatatctgcttcttcccatcatagtataacaattagacat |
37836278 |
T |
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| Q |
119 |
ttaacaaaaggtttactacgtgttagcaataagatacaaaataggggggaaaaggacaatgagactaaaatttcaatattatggaaaagtac----atag |
214 |
Q |
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| T |
37836279 |
ttaacaaaaggtttactacgtgttagcaataagatacaaaataggggggaaaaggacaatgagactaaaatttcaatattatggaaaagtacatatatag |
37836378 |
T |
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| Q |
215 |
gtgctaggttttcaatactagaataacac |
243 |
Q |
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| T |
37836379 |
gtgctaggttttcaatactagaataacac |
37836407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 37845647 - 37845749
Alignment:
| Q |
19 |
aattcgacgaatttcagctttacgcaaccatcgatactgtgcttgtaatacaattttctcaatatctgcttcttcccatcatagtattacaattagacat |
118 |
Q |
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|||| ||| |||||||||| ||| | ||||||||| ||||||||||||| ||||| |||||||||| || | |||||||||||| | |||||||||| |
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| T |
37845647 |
aatttgacaaatttcagctggacgtagccatcgatattgtgcttgtaataaaatttcttcaatatctg-ttgtggccatcatagtataagaattagacat |
37845745 |
T |
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| Q |
119 |
ttaa |
122 |
Q |
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|||| |
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| T |
37845746 |
ttaa |
37845749 |
T |
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