View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8956_low_12 (Length: 250)
Name: NF8956_low_12
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8956_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 35795669 - 35795444
Alignment:
| Q |
8 |
ttggtgttgtggcttaatggaggtaaaaccatatactaannnnnnnnctttctttctgtcatataaaaaactaacatgttccacatttaatgaaataagc |
107 |
Q |
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| T |
35795669 |
ttggtgttgtggcttaatggaggtaaaaccatatactaattttttttctttctttctgtcatataaaaaactaacatgttccacatttaatgaaataagc |
35795570 |
T |
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| Q |
108 |
aagataatcgtcatcttgtaagggttgagttgagttaaatccaactcgatttttaagataatatcagagtctatcaaaaatctatttggccttcttttat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||| |
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| T |
35795569 |
aagataatcgtcatcttgtaagggttgagttgagttaaatccaactcgacttttaagataatatcagagtctatcaaaaatttatttgaccatcttttat |
35795470 |
T |
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| Q |
208 |
catgtcaccgctattgcgggccatgc |
233 |
Q |
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||||||||| ||||| |||||||||| |
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| T |
35795469 |
catgtcaccactattacgggccatgc |
35795444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Complemental strand, 1225391 - 1225349
Alignment:
| Q |
151 |
actcgatttttaagataatatcagagtctatcaaaaatctatt |
193 |
Q |
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||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
1225391 |
actcgatttttaagataatatcatagtctattataaatctatt |
1225349 |
T |
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