View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8956_low_8 (Length: 282)
Name: NF8956_low_8
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8956_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 262
Target Start/End: Original strand, 6227415 - 6227663
Alignment:
| Q |
15 |
agaccaatttgatagttaaatttgacatcatnnnnnnnn-ttataataaattaataaaaagaacttattactttgtcaaatatccaaaacttcacgaata |
113 |
Q |
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| T |
6227415 |
agaccaatttgatagttaaatttgacatcataaaaaaaaattataataaattaataaaaagaactcattactttgtcaaatatccaaaacttcacgaata |
6227514 |
T |
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| Q |
114 |
attcatcttctctcttttctctcatcaatcaatctaaacataaactttaagcacatcacactttgaaataaaagactcaaatcttgatcatctttcatca |
213 |
Q |
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| T |
6227515 |
attcatcttctctcttttctctcatcaatcaatctaaacataaactttaagcacatcacactttgaaataaaagactcaaatcttgatcatctttcatca |
6227614 |
T |
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| Q |
214 |
atcaatagatcttttataatgagggagaaattgagatcttcaaaagaag |
262 |
Q |
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| T |
6227615 |
atcaatagatcttttataatgagggagaaattgagatcttcaaaagaag |
6227663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 6265419 - 6265599
Alignment:
| Q |
83 |
actttgtcaaatatccaaaacttcacgaataattcatcttctctcttttctctcatcaatcaatctaaacataaactttaagcacatcacactttgaaat |
182 |
Q |
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| T |
6265419 |
acttcgtcaaatatctaaaacttcatgaaatattattcttctctcttttctctcatcaatcaacctaacaataaaattttacagcatcaaaatcccaatt |
6265518 |
T |
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| Q |
183 |
aaaagactcaaatcttgatcatctttcatcaatcaatagatcttttataatgagggagaaattgagatcttcaaaagaagt |
263 |
Q |
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| T |
6265519 |
gaaaaactcaaattttcatcatctttcatcaatcgatagatctttcataatgaaggagacacttagaacttaaaaagaagt |
6265599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 6239663 - 6239743
Alignment:
| Q |
80 |
attactttgtcaaatatccaaaacttcacg-aataattcatcttctctcttttctctcatcaatcaatctaaacataaactt |
160 |
Q |
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| T |
6239663 |
attactttgtcaaatatccaaaacttcatgaaaaaaattatcttctctcttttcactcatc-atcaatctaacaataaactt |
6239743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 6274588 - 6274645
Alignment:
| Q |
201 |
tcatctttcatcaatcaatagatcttttataatgagggagaaattgagatcttcaaaa |
258 |
Q |
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| T |
6274588 |
tcatctttcatcaatcaatagatcttttatgataagagagaaatttagatcttaaaaa |
6274645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 6249642 - 6249706
Alignment:
| Q |
195 |
tcttgatcatctttcatcaatcaatagatcttttataatgagggagaaattgagatcttcaaaag |
259 |
Q |
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| T |
6249642 |
tctttatcatctttcatcaatctatgaatcttttacaatgagagagaaatttagatcttaaaaag |
6249706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Original strand, 6260831 - 6260911
Alignment:
| Q |
183 |
aaaagactcaaatcttgatcatctttca-tcaatcaatagatcttttataatgagggagaaattgagatcttcaaaagaag |
262 |
Q |
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|||| |||||||| || ||||||||||| ||||||||| |||||||| ||||| |||||||| |||||| |||||||| |
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| T |
6260831 |
aaaaaactcaaatatttatcatctttcattcaatcaatgaatcttttaaaatgaacgagaaattttgatctttaaaagaag |
6260911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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