View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8956_low_9 (Length: 254)
Name: NF8956_low_9
Description: NF8956
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8956_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 2600829 - 2601048
Alignment:
| Q |
23 |
gtccaaacataccaaatgtttgagctatgaatactagaaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggt |
122 |
Q |
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| T |
2600829 |
gtccaaacataccaaatgtttgagcaatcaatactagaaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggt |
2600928 |
T |
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| Q |
123 |
gtctttaacac--atagagacggacttcatgtttttctgtctcttaacttttcgccgttgattcaaatttttcttagtattattaattgaatggaatgag |
220 |
Q |
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| T |
2600929 |
gtcttcaacacatatagagacggacttcatgtttatctgtctcttaacttttcgtcgttgattcaaatttttctcagtattattaattgaatggaatgag |
2601028 |
T |
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| Q |
221 |
ataaagggttaaagtataat |
240 |
Q |
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|||||||||||||||||||| |
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| T |
2601029 |
ataaagggttaaagtataat |
2601048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 2573390 - 2573570
Alignment:
| Q |
60 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacacatagagacggacttcatgtttttctg |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||| || | | ||||| ||||||||||||||||||||||||||||| || |
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| T |
2573390 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattactatgcaatt-atgatgtctctaacacatagagacggacttcatgtttttttg |
2573488 |
T |
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| Q |
160 |
tctcttaacttttcgccgttgattcaa-atttttcttagtattattaattgaatggaatgagataaagggttaaagtataat |
240 |
Q |
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| T |
2573489 |
tatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataat |
2573570 |
T |
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