View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_high_10 (Length: 513)
Name: NF8957_high_10
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 190 - 497
Target Start/End: Complemental strand, 49881058 - 49880750
Alignment:
| Q |
190 |
ataagtttaaagtggatataagagataagactaatattttcaatgccttaaagttttagacagagatgtggtgtcatgatctcttaacggtcatagatta |
289 |
Q |
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| T |
49881058 |
ataaatttaaagtggatataagagataagactaatattttcaatgccttaaagttttagacagagatgtggtgtcatgatctcttaacggtcatagatta |
49880959 |
T |
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| Q |
290 |
ttaacatgttgctctcacattctactagactttcttgcaagtggtatcataatca-ttattaagcttggtagatgagcgagagtcggtattgatacatta |
388 |
Q |
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| T |
49880958 |
ttaacatgttgctctgacattctactagactttcttgcaagtggtatcataatcatttattaagcttggtagatgagcgagagtcaggattgatacatta |
49880859 |
T |
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| Q |
389 |
aatttttgtatcaaaaatcatccggacaatgttatattcttgcatagaagtctttgtaatggtatagttagaaggtaatacattttcttaattcaaaaat |
488 |
Q |
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| T |
49880858 |
aatttttgtatcaaaagtcatccggacaatgttatattcttgcatcgaagtcattgtaatggtatagttagaaggtaatgcattttcttaattcaaaaat |
49880759 |
T |
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| Q |
489 |
ttatcatat |
497 |
Q |
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| T |
49880758 |
ttatcatat |
49880750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 49881448 - 49881256
Alignment:
| Q |
1 |
ccatcaaggtaaagaatgaacaactatatttatctagtagaatagcttcaaaatcaagacatccttactataagaatgaatagtaatacatatttaatat |
100 |
Q |
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| T |
49881448 |
ccatcaaggtaaagaatgaacaactatatttatctagtagaatagtttcaaaatcaagacatccttactataagaatgaatagtaatacatatttaacat |
49881349 |
T |
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| Q |
101 |
tgaacacattcataattgatgtgagacattcacacttagactagtttgttggtattcaagtgtgaataatagtcatatattgactatgaataa |
193 |
Q |
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| T |
49881348 |
tgaacacattcataattgatgtgagacattcacacttagactagtttgttggtattcaagtgtgaataatagtcatatattgactatgaataa |
49881256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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