View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_high_13 (Length: 484)
Name: NF8957_high_13
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_13 |
 | |
|
| [»] scaffold0257 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 21 - 471
Target Start/End: Original strand, 3567942 - 3568392
Alignment:
| Q |
21 |
atagatgccccgactcggaatagggcattcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtggggc |
120 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3567942 |
atagatgccccgactcggaatagggccttcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtggagc |
3568041 |
T |
|
| Q |
121 |
ggcagggtttttctttcaaagtagatatgcagtatgagcgcatgcctcttttttgtcatcattgttatgttattggtcataacatttcaaattgtaagtg |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3568042 |
ggcagggtttttctttcaaagtagatatgcagtatgagcgcatgcctcttttttgtcatcattgttatgtcattggtcataacatttcaaattgtaagtg |
3568141 |
T |
|
| Q |
221 |
gttgcatcccagagccttctcgcgacaaagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtggaagtgacaacacc |
320 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568142 |
gttgtatcccagagccttctcgcgacaaagacaaaggaaagaagaaggtggaggatgaataaatttttgttcccattaagcatgtggaagtgacaacacc |
3568241 |
T |
|
| Q |
321 |
tttgtccactgcgactgttgatgttaatcaagaaaaatgttcttcgtctgatgttccttccaaggatatttccgccaactcctttagcttcaccttgaag |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568242 |
tttgtccactgcgactgttgatgttaatcaagaaaaatcttcttcgtctgatgttccttccaaggatatttccgccaactcctttagcttcaccttgaag |
3568341 |
T |
|
| Q |
421 |
aatgtgtcggatcatattcctcaaggtagacttcctcgtcctgatgtccat |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3568342 |
aatgtgtcggatcatattcctcaaggtagacttcctcgtcctgatatccat |
3568392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 32239332 - 32239235
Alignment:
| Q |
22 |
tagatgccccgactcggaatagggc--attcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtgg |
117 |
Q |
| |
|
||||||||||||| || |||||||| ||||| ||| ||||| ||||||||||||| |||||| ||||||| | | ||||||||||| ||||||| |
|
|
| T |
32239332 |
tagatgccccgacacgaaatagggctaattcagacactatgcgagaattttggtggacattgacttatctaaaagagcctatgatgaaattcttgtgg |
32239235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 24371916 - 24372011
Alignment:
| Q |
22 |
tagatgccccgactcggaatagggcattcaaacattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtgg |
117 |
Q |
| |
|
|||||||||||||||| |||||||| |||| |||||||||| |||||||||||| |||||| | |||||| | | |||||||||| ||||||| |
|
|
| T |
24371916 |
tagatgccccgactcgtaatagggccttcagacattatgcataaattttggtggacattgacttgtctaagagggccgatgatgaaattcttgtgg |
24372011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 14385290 - 14385152
Alignment:
| Q |
57 |
tatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttgtggggcggcagggtttttctttcaaagtagatatgcagtatg |
156 |
Q |
| |
|
|||||||| ||| | ||||| |||||| |||| ||||| || ||||||||||||||||| | ||| |||||||| |||| || ||||| |||| |||| |
|
|
| T |
14385290 |
tatgcacgcattcttgtggacattgacttatcgaagcgggtttatgatgaaatccttgttgaacgggagggttttgcttttaacgtagaagtgcaatatg |
14385191 |
T |
|
| Q |
157 |
agcgcatgcctcttttttgtcatcattgttatgttattg |
195 |
Q |
| |
|
| | ||| | |||||||||||||||||||| |||| |
|
|
| T |
14385190 |
aaagacgtcctttgttttgtcatcattgttatgtcattg |
14385152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0257 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0257
Description:
Target: scaffold0257; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 14624 - 14679
Alignment:
| Q |
28 |
ccccgactcggaatagggcattcaaacattatgcacgaattttggtggatattgac |
83 |
Q |
| |
|
||||||| || |||||||| |||| |||||||||||||||| ||||||| |||||| |
|
|
| T |
14624 |
ccccgacacgtaatagggccttcagacattatgcacgaattctggtggacattgac |
14679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 11483044 - 11483104
Alignment:
| Q |
54 |
cattatgcacgaattttggtggatattgacctatctaagcgtgtgtatgatgaaatccttg |
114 |
Q |
| |
|
||||||||| | |||||| |||| |||||| |||| |||||||| | |||||||||||||| |
|
|
| T |
11483044 |
cattatgcaaggattttgttggacattgacttatcaaagcgtgtttttgatgaaatccttg |
11483104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University