View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_high_14 (Length: 460)
Name: NF8957_high_14
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 56019582 - 56019813
Alignment:
| Q |
17 |
tattacaacaaccaaagcaaactttgctactaatagccttgaacaaatcaacaatttatttctctattctcaccaatcaa-tgataaaacttgaaatttc |
115 |
Q |
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| T |
56019582 |
tattacaacaaccaaagcaaactttgctactaatagccttgaacaaatcaacaatttatttctctattctcaccaatcaaatgataaaacttgaaatttc |
56019681 |
T |
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| Q |
116 |
ctttggcagttcagttaattaccaaggcaattgcaagccaaataattacaacaccatttatctattgtaaaaccaaagcacctccagcctcagtgtttgc |
215 |
Q |
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| T |
56019682 |
ctttggcagatcagttaattaccaaggcaattgcaagccaaataattacaacaccatttatctattgtaaaatcaaagcacctccaacctcagtgtttgc |
56019781 |
T |
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| Q |
216 |
aaaatcaatattgtgaaaaccaaacactacaa |
247 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
56019782 |
aaaatcaatattgtgaaaaccaaacactacaa |
56019813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 245 - 435
Target Start/End: Original strand, 56019886 - 56020076
Alignment:
| Q |
245 |
caaaaatctaaagcatgaacataaatgaaaaacaacctagaatcttatacctatgtaaattaacttctgtctggtttgaaatgtggttgcaacggttagc |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56019886 |
caaaaatctaaagcatgaacataaatgaaaaacaacctagaatcttatacctaagtatattaacttctgtctggtttgaaatgtggttgcaacggttagc |
56019985 |
T |
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| Q |
345 |
tacgcaccccatgtttatagactttagaggtactcttggaagataagtattttagtgcatcaacaatttcaccaatggttggacgttctct |
435 |
Q |
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| T |
56019986 |
tgcgcaacccatgtttatagactttagaggtactcttggaagataagtattttagtgcatcaacaatttcaccaatggttggacgttctct |
56020076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 6155619 - 6155705
Alignment:
| Q |
249 |
aatctaaagcatgaacataaatgaaaaacaacctagaatcttatacctatgtaaattaacttctgtctggtttgaaatgtggttgca |
335 |
Q |
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|||| ||| |||| ||||||||||||||||||||||||||| || |||||| || |||| | ||||| ||||||||||||||||| |
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| T |
6155619 |
aatcaaaatcatggacataaatgaaaaacaacctagaatctaatgcctatgaaatttaatctatgtctaatttgaaatgtggttgca |
6155705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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