View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_high_15 (Length: 458)
Name: NF8957_high_15
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 41659064 - 41659488
Alignment:
| Q |
18 |
aaatactacaataacttaatcacgaaagatcctaaaaatccagcgggtccttgatttaattactaacaaccaagaacaaataccctcattggtccaaaaa |
117 |
Q |
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| T |
41659064 |
aaatactacgacaacttaattacgaaagatcctaaaaatccagcgggtccttgatttaattactaacaaccaagaacaaataccctcattggtccaaaaa |
41659163 |
T |
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| Q |
118 |
ttatatttccatgccaagctatctaaaaaactacacgagcatttatccgatcaccacttgtattgaattcgatatttaaaaagcagcattgtaaaaatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41659164 |
ttatatttccatgccaagctatctaaaaaactacacgagcatttatccgatcaccacttgtattgaattcgatatttataaagcagcattgtaaaaatgc |
41659263 |
T |
|
| Q |
218 |
atagtttataggaatcataggagatacatgcagaattctcatacctgatgatgattcaccttgagcagcattgctatcatccacccactttcgcttcaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41659264 |
atagtttataggaatcataggagatacatgcagaactctcatacctgatgatgattcaccttgagcagcattgctatcatccacccactttcgcttcaac |
41659363 |
T |
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| Q |
318 |
tttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctccttcaactaaactagttttcttaacttcctcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41659364 |
tttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatgtctccttcaactaaactagttttcttaacttcctcca |
41659463 |
T |
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| Q |
418 |
acaatgtttcataattattctgtgc |
442 |
Q |
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| T |
41659464 |
acaatgtttcataattactctgtgc |
41659488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 311 - 444
Target Start/End: Original strand, 41686349 - 41686485
Alignment:
| Q |
311 |
cttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctccttcaactaaactagtttt---ctta |
407 |
Q |
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|||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||||| |||||| |||| ||| | ||||||||||| |||| |
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| T |
41686349 |
cttcaactttctcagctcacgaacttctaactccaattcactgttcttctttcttagctctccaatgatgtctctatcacccaaactagttttttcctta |
41686448 |
T |
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| Q |
408 |
acttcctccaacaatgtttcataattattctgtgctc |
444 |
Q |
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| T |
41686449 |
acttccttcaacaatttttcataattattttgtgctc |
41686485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 288 - 444
Target Start/End: Original strand, 41708707 - 41708863
Alignment:
| Q |
288 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctcctt |
387 |
Q |
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| T |
41708707 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtcttttt |
41708806 |
T |
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| Q |
388 |
caactaaactagttttcttaacttcctccaacaatgtttcataattattctgtgctc |
444 |
Q |
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|| |||| | |||||||||||||||| ||| || ||||||||||||| ||||||| |
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| T |
41708807 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctc |
41708863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 288 - 444
Target Start/End: Original strand, 41717779 - 41717935
Alignment:
| Q |
288 |
ttgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttcttagctctctaatgatatctcctt |
387 |
Q |
| |
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|||||||||| |||||| || ||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||| | ||| || |
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| T |
41717779 |
ttgctatcattcacccatttctccttcaactttctcagttcacaaacttctaactccaattcattgttcttctttcttagctctccaatggtgtcttttt |
41717878 |
T |
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| Q |
388 |
caactaaactagttttcttaacttcctccaacaatgtttcataattattctgtgctc |
444 |
Q |
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|| |||| | |||||||||||||||| ||| || ||||||||||||| ||||||| |
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| T |
41717879 |
cagctaagtttgttttcttaacttccttcaataacttttcataattattttgtgctc |
41717935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 284
Target Start/End: Original strand, 41686184 - 41686346
Alignment:
| Q |
122 |
atttccatgccaagctatctaaaaaactacacgagcatttatccgatcaccacttgtattgaattcgatatttaaaaagcagcattgtaaaaa-tgcata |
220 |
Q |
| |
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||||||||| |||||||||| ||| ||||| | ||||||||||||| |||||||| ||| || || |||| ||| ||| |||| ||||| |||||| |
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| T |
41686184 |
atttccatgttaagctatctagaaatctacataaacatttatccgatctttacttgtatcgaagtcaatgtttataaaacaggattggaaaaaatgcata |
41686283 |
T |
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| Q |
221 |
gtttataggaatcataggagatacatgcagaattctcatacctgatgatgattcaccttgagca |
284 |
Q |
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||| |||||||||||| ||||||||||||||||| | |||||||||||||||||| || ||||| |
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| T |
41686284 |
gtt-ataggaatcataagagatacatgcagaatttttatacctgatgatgattcatctggagca |
41686346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 442
Target Start/End: Complemental strand, 14691033 - 14690922
Alignment:
| Q |
331 |
aaacttccaactccaattcattattcttctttcttagctctctaatgatatctccttcaactaaactagttttcttaacttcctccaacaatgtttcata |
430 |
Q |
| |
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||||||||||||||||||||||||| ||| || ||||||| ||| | |||| |||| |||||||| ||||||||| |||| |||| || ||||||| |
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| T |
14691033 |
aaacttccaactccaattcattattattcatttttagctcaacgatgctttctctttcacctaaactatttttcttaatttccatcaacgatttttcata |
14690934 |
T |
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| Q |
431 |
attattctgtgc |
442 |
Q |
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|||||||||||| |
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| T |
14690933 |
attattctgtgc |
14690922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 41688008 - 41687944
Alignment:
| Q |
286 |
cattgctatcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattca |
350 |
Q |
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| T |
41688008 |
cattgctatcatcgacccatttttcattcaactttctcagctcacaaacttcgaactccaattca |
41687944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 14682519 - 14682473
Alignment:
| Q |
397 |
tagttttcttaacttcctccaacaatgtttcataattattctgtgct |
443 |
Q |
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|||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
14682519 |
tagttttcttaacttccttcaacaatttttcataattattctgtgct |
14682473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 2439189 - 2439118
Alignment:
| Q |
293 |
atcatccacccactttcgcttcaactttctcagctcacaaacttccaactccaattcattattcttctttct |
364 |
Q |
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| T |
2439189 |
atcatccacccatttttccaccaactttctcagctcacaagcatccaactccaatttattgttcttctttct |
2439118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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