View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_high_22 (Length: 334)
Name: NF8957_high_22
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 46838072 - 46837762
Alignment:
| Q |
7 |
ttggtgttgaagacttccccgtgatgtagtcgagacatggtgataggtttactaacacattcgtgcaacttgattgtgccatagcatctgcacatagcat |
106 |
Q |
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| T |
46838072 |
ttggtgttgaagacttccccgtgatgtagtcgagacatggtgataggtttactaacacattcgtgcaacttgattgtgccatagcatctgcacatagcat |
46837973 |
T |
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| Q |
107 |
ggccaatataaccaaaacaagacccttacttatttttacttgagccattggaattttttgtgtgaaatcttttggaatcgatcctatgaaatggtaggaa |
206 |
Q |
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| T |
46837972 |
ggccaatataaccaaaacaagacccttacttatttttacttgagccattggaattttttgtgtgaaatcttttggaatcgatcctatgaaatggtaggaa |
46837873 |
T |
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| Q |
207 |
gactttgtgattgctttattagcttgggtggtttggaaggatgggatttaatggctttttatagggaaataaaacaaatagttaatgtagaaagggaagg |
306 |
Q |
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| T |
46837872 |
gactttgtgattgctttattagcttgggtggtttggaaggatgggatttaatggctttttatagggaaataaaacaaatagttaatgtagaaagggaagg |
46837773 |
T |
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| Q |
307 |
aaggctattat |
317 |
Q |
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|||||| |||| |
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| T |
46837772 |
aaggctgttat |
46837762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 44059622 - 44059846
Alignment:
| Q |
7 |
ttggtgttgaagacttccccgtgatgtagtcgagacatggtgataggtttactaacacattcgtgcaacttgattgtgccatag---catctgcacatag |
103 |
Q |
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| T |
44059622 |
ttggtgttgaagacttccccgtgatgtagtcgagacatggtgacaggttcactaacacattcgtgcatcttgatggtgccataggcgctcctgcacatag |
44059721 |
T |
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| Q |
104 |
catggccaatataaccaaaacaagacccttacttatttttacttgagccattgga------attttttgt---gtgaaatcttttggaatcgatcctatg |
194 |
Q |
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| T |
44059722 |
catgaccaatataaccaaaacaagacccgtacctatttttacttgtgccattggattttttattttttttttggtgaaatcttttggaatcgatcctatg |
44059821 |
T |
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| Q |
195 |
aaatggtaggaagactttgtgattg |
219 |
Q |
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| T |
44059822 |
aattggaaagaagactttgtgattg |
44059846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 46828788 - 46828693
Alignment:
| Q |
64 |
cattcgtgcaacttgattgtgccatagcatctgcacatagcatggccaatataaccaaaacaagacccttacttatttttacttgagccattggaa |
159 |
Q |
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| T |
46828788 |
cattcgtgcaacttgattgtgccgtaccacttgcatagagcaaggttaatgtaaccaaaacaagacctatattgaattttacttgtgccattggaa |
46828693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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