View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_high_32 (Length: 270)
Name: NF8957_high_32
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 10158976 - 10158740
Alignment:
| Q |
19 |
agaagtacatggacgccctaaagattttcagtcaaatgcaagccgagaatgtaaaacctaactcaaccacgatttgcagcttactttgtgcatgtgcagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10158976 |
agaagtacatggacgccctaaagattttcagtcaaatgcaagccgagaatgtaaaacctaactcaaccacgatttgcagcttactttgtgcatgtgcagg |
10158877 |
T |
|
| Q |
119 |
tccatctctgttgaagaaaggtgaagagttacattgctttagtatgaaactagggtttgtggatgatatatacgttgcaacagcactcattgacatgtat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10158876 |
tccatctctgttgaagaaaggtgaagagttacattgctttagtatgaaactagggtttgtggatgatatatacgttgcaacagcactcattgacatgtat |
10158777 |
T |
|
| Q |
219 |
agtgaagcaggaaaactaaaagtagcatacaatgttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10158776 |
agtgaagcaggaaaactaaaagtagcatacaatgttt |
10158740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University