View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_high_33 (Length: 268)
Name: NF8957_high_33
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_33 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 7836543 - 7836778
Alignment:
| Q |
19 |
agatttccactaatattttttgtcctatatattctctatttcctcctttatccgaaaattattttcccnnnnnnnntaaaattagaacaatattcccatt |
118 |
Q |
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| T |
7836543 |
agatttccactaatattttttgtcctatatattctctatttcctcctttatccgaaaattattttcccaaaaaaaa-aaaattagaacaatattcccatt |
7836641 |
T |
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| Q |
119 |
agtggtcctatataaacagttaaagcacttccttagatttctgagaataggattgattagtgaaattcggttggtgggattgtcatttatcagaataatc |
218 |
Q |
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| T |
7836642 |
agtggtcctatataaacagttaaagcacttccttagatttctgagaataggattgattagtgaaattcggttggtgggattatcatttatcagaataatc |
7836741 |
T |
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| Q |
219 |
acacattaaagaataatagtatcttactatctctgct |
255 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
7836742 |
acacattaaagaataatagtatcttactatctttgct |
7836778 |
T |
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