View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_high_44 (Length: 202)
Name: NF8957_high_44
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 38265238 - 38265070
Alignment:
| Q |
17 |
cagagacgagaggtgcagactaaaacagcccaattgttagtgtgcatcgttgaagaagaagagtctactgtatttgtgagaaatattatcagcaatatta |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38265238 |
cagaaacgagaggtgcagactaaaacagcccaattgttagtgtgcatcgttgaagaagaagagtctacggtatttgtgagaaatattatcagcaatatta |
38265139 |
T |
|
| Q |
117 |
tcacaagtactttcatggtggaactcatcatcgaagaggcggtggccgtcactgtcttgctgccctagg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38265138 |
tcacaagtactttcatggtggaactcatcattgaagaggcggtggccgtcactgtcttgctgccctagg |
38265070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 24196621 - 24196572
Alignment:
| Q |
17 |
cagagacgagaggtgcagactaaaacagcccaattgttagtgtgcatcgt |
66 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24196621 |
cagaaacgagaggtgcagactaaaacagcccaattattagtgtgcatcgt |
24196572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University