View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_high_9 (Length: 567)
Name: NF8957_high_9
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 42114155 - 42113608
Alignment:
| Q |
1 |
agaaaaaagcacagaaaaacaccaccaatgaaacgacgccgtaaatatcatcttcaggactccatagaacggtgaaggccaacgatacaacctgaagagg |
100 |
Q |
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| T |
42114155 |
agaaaaaagcacagaaaaacaccaccaatgaaacgacgccgtaaatatcatcttcaggactccatagaacggtgaaggccaacgacacaacctgaagagg |
42114056 |
T |
|
| Q |
101 |
aagagccaccaaaacgacagaacccaatgcgtagattcgaatccttaatcctttgttaatcaccaatgataaaaccttccaacatgagaacaataaccat |
200 |
Q |
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| T |
42114055 |
aagagccaccaaaacgacagaacccaatgcgtagattcgaatccttaatcctttgttaatcaccaatgataaaaccttccaacatgagaacaataaccat |
42113956 |
T |
|
| Q |
201 |
gcacaatatgcagcagcgaatgcggcgaacacaacgctgtttaagaacgggtaagcgcagagaacggtgtcgtcttctagaataacaaatgtttgtcgta |
300 |
Q |
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| T |
42113955 |
gcacaatatgcagcagagaatgccgcgaacacaacgctgtttaagaacgggtaagcacagagaacggtgtcgtcttctagaataacaaatgtttgtcgta |
42113856 |
T |
|
| Q |
301 |
acaacgccggaacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttacagccca |
400 |
Q |
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| T |
42113855 |
acaacgccggaacacgatgttccaatggattgaaatagacaagtaaaccttgaagaatacctaatggaagacacgtgctaaacacaaaggttacagccca |
42113756 |
T |
|
| Q |
401 |
accgtcgtttggtgtcttttttctgatggaagcgttgaggagaaacaacaacgttaagagaaaagctggttcaaagaatccaagagaaaaaacaatgtgg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113755 |
accgtcgtttggtgtcttttttctgatggaagcgttgaggagaaacaacaacgttaagagaaaagctggttcaaagaatccaagagaaaaaacaatgtgg |
42113656 |
T |
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| Q |
501 |
attttgcagagattggcttgttgagtaatatctagagagggtgaaagt |
548 |
Q |
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| T |
42113655 |
attttgcagagattggcttgttgagtaatatctagggagggtgaaagt |
42113608 |
T |
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