View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_1 (Length: 1305)
Name: NF8957_low_1
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 753; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 373 - 1288
Target Start/End: Complemental strand, 7458214 - 7457305
Alignment:
| Q |
373 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttcaatcttggacatgaaagaaataaagtgttaccacttttaatt |
472 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458214 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttcaatcttggacatgaaagaaataaagtgttaccacttttaatt |
7458115 |
T |
|
| Q |
473 |
tgtctgtccttctaaaaagttctctctagctaatgtcttgagtt---tgattgattaatggtaagaacgtggaatcaattaatttgccacaaaaattgga |
569 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7458114 |
tgtctgtccttctaaaaagttctctctagctaatgtcttgagttatttgattgattaatggtaagaacgtggaatcaattaattggccacaaaaattgga |
7458015 |
T |
|
| Q |
570 |
agnnnnnnnnnngcatggtactactaggtgatattttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtc |
669 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458014 |
agaaaaaaaa--gcatggtactactaggtgatattttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtc |
7457917 |
T |
|
| Q |
670 |
tagtctttgtttgttcttgtaagcaattatcaaaattagcttatcttttagggttccataaagagacaagggttgttggtgtttgcagatgatgactttt |
769 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7457916 |
tagtctttgtttgttcttgtaagcaattatcaaaattagcttatcttttagggttccataaagagacaagggttgttggtgtttgcagatgatgactttt |
7457817 |
T |
|
| Q |
770 |
ttctctttttaattctggtatctgttctatccacgctcttcattgc--acatcttttggtaccaaatggtagtacatgcaaattgcactctttccaatct |
867 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7457816 |
ttctctttttaattctggtatctgttctatccacgctcttcattgcgcacatcttttggtaacaaatggtagtacatgcaaattgcactctttccaatct |
7457717 |
T |
|
| Q |
868 |
ttccaatcaatcatggagnnnnnnnncttaatggatcaaatcaannnnnnncttggttaattaagtcagaactattttttgaatatgataaaaagaaggg |
967 |
Q |
| |
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|||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7457716 |
ttccaatcaatcatggagttttttt-cttaacggatcaaatcaattgttttcttggttaattaagtcagaactattttttgaatatgataaaaagaaggg |
7457618 |
T |
|
| Q |
968 |
aacatatataattgaaaatatggttattagtaacatcctcattttaaaaaaggtattaataacaccctcatttttatttggataaggacttcatgtcttc |
1067 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7457617 |
aacatatataattgaaaatatggttattagtaacatcctcaatttaaaaaaggtattaataacaccctcatttttatttggataaggacttcatgtcttc |
7457518 |
T |
|
| Q |
1068 |
aaccaagtagactggtgtgaaggtaggttgttagtaaaaaatattatgtgtttagtttggtgcgagagagttggcaagtaagagtacgtgatatggtagc |
1167 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7457517 |
aaccaagtagactggtgtgaaggtaggttgttagt---aaatattatgt-----gtttggtgcgagagagttggcaattaagagtacgtgatatggtagc |
7457426 |
T |
|
| Q |
1168 |
acaattgaatttgttgctagagagggcacgcttaggtcaagggtttgctatacaatattagcagtactatgaacaaaaacattatttttgtgtgtggtta |
1267 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7457425 |
acaattgaatttgttgctagagagggcacgcttaggtcaagggtttgctatacaatattagcagtactatgaacaaaaacattatttttttgtgtggtta |
7457326 |
T |
|
| Q |
1268 |
tctatatcttctatactatat |
1288 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
7457325 |
tctatatcttctatactatat |
7457305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 11 - 329
Target Start/End: Complemental strand, 7458558 - 7458240
Alignment:
| Q |
11 |
tttggtgttatgtgcactgtatttgagttatattacttcctgcaatnnnnnnncaaaggttatgctgttgtttgttgactttacttaattgctgtcaatc |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458558 |
tttggtgttatgtgcactgtatttgagttatattacttcctgcaataaaaaaacaaaagttatgctgttgtttgttgactttacttaattgctgtcaatc |
7458459 |
T |
|
| Q |
111 |
ttttaaagccaaccaatgaatcgggaccagtagcattagcatatatactcatactaggttcaaccctataaatattccaaataggnnnnnnnnnnnnnnn |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7458458 |
ttttaaagccaaccaatgaatcgggaccagtagcattagcatatatactcatacttggttcaaccctataaatattccaaataggaaaagaaaaagaaaa |
7458359 |
T |
|
| Q |
211 |
ncttggcattatgtttatttggaattctgtgcacccctctcccatgcacacaaacagcagaactaagcaacatgaaccgtcctctaactgcaatctgtgt |
310 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7458358 |
acttggcattatgtttatttggaattgtgtgcacccctctcccatgcacacaaacagcagaactaagcaacatgaaccgtcctctaactgcaatctgtgt |
7458259 |
T |
|
| Q |
311 |
catccaacacctcttaaca |
329 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
7458258 |
catccaacacctcttaaca |
7458240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 604 - 723
Target Start/End: Complemental strand, 7442704 - 7442585
Alignment:
| Q |
604 |
tttctcactccctatccctaaccaacgagagacatctttttcatcagctctcactcaaatcaagtctagtctttgtttgttcttgtaagcaattatcaaa |
703 |
Q |
| |
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||||||| |||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |
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| T |
7442704 |
tttctcattccctaaccctaaccaatgagagacatctttttaatctgctctcactcaaatcaagtctagtctttctttcttcttgtaagcaatgatcaaa |
7442605 |
T |
|
| Q |
704 |
attagcttatcttttagggt |
723 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
7442604 |
attagcttatcttttagggt |
7442585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 373 - 531
Target Start/End: Complemental strand, 7443926 - 7443761
Alignment:
| Q |
373 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatatccagttca--atcttggacatgaaagaaataaagtgttaccacttttaa |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||| | ||||||||||| |
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| T |
7443926 |
ataaaaatagatcaaacgtggcattaatctagtcaatctattgaggaatattcagttcaatatcctggacaagaaagaaataaagtttgaccacttttaa |
7443827 |
T |
|
| Q |
471 |
tttgtctgtcctt-ct----aaaaagttctctctagctaatgtcttgagtttgattgattaatggt |
531 |
Q |
| |
|
||||||||||||| || |||| |||||||||| ||||||| ||| |||||||||||||||| |
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|
| T |
7443826 |
tttgtctgtccttactaaacaaaaggttctctctatctaatgttttggacttgattgattaatggt |
7443761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 717 - 800
Target Start/End: Complemental strand, 7441984 - 7441902
Alignment:
| Q |
717 |
ttagggttccataaagagacaagggttgttggtgtttgcagatgatgactttttt--ctctttttaattctggtatctgttctatc |
800 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||| | ||||||||| |||||||| ||| |||||||||||||||| |
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|
| T |
7441984 |
ttagggttccctaaagagaccagggttgttggtgtttgcaga--aagacttttttccctcttttttatt-tggtatctgttctatc |
7441902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 7444035 - 7443970
Alignment:
| Q |
255 |
tgcacacaaacagcagaactaagcaacatgaaccgtcctctaactgc-aatctgtgtcatccaaca |
319 |
Q |
| |
|
|||||||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
7444035 |
tgcacacacacagcagcaccaagtaacatggaccgtcctctaactgcaaatctgtgtcatccaaca |
7443970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 957 - 1002
Target Start/End: Complemental strand, 7441728 - 7441683
Alignment:
| Q |
957 |
aaaaagaagggaacatatataattgaaaatatggttattagtaaca |
1002 |
Q |
| |
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||||| || ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7441728 |
aaaaaaaatggaacatatataattgaaaatatggatattagtaaca |
7441683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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