View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_low_10 (Length: 826)
Name: NF8957_low_10
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 192 - 807
Target Start/End: Complemental strand, 10868041 - 10867426
Alignment:
| Q |
192 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10868041 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
10867942 |
T |
|
| Q |
292 |
atgataactacaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagcaactttggtgacatctttatttgatctgtt |
391 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867941 |
atgataagtacaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagcaactttggtgacatctttatttgatctgtt |
10867842 |
T |
|
| Q |
392 |
gtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagtttc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10867841 |
gtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgc |
10867742 |
T |
|
| Q |
492 |
atggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtcc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10867741 |
ctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtgc |
10867642 |
T |
|
| Q |
592 |
ccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagc |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867641 |
ccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagc |
10867542 |
T |
|
| Q |
692 |
aggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaaaccaccaagagcaccagccatggctgaacccgtaaggttt |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10867541 |
aggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattaaagccgccaagagcaccagccatggctgaaccggtaaggttt |
10867442 |
T |
|
| Q |
792 |
tttagcatgttaagct |
807 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10867441 |
tttagcatgttaagct |
10867426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 192 - 807
Target Start/End: Original strand, 10886328 - 10886943
Alignment:
| Q |
192 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaactaaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886328 |
agtaaaacttattcatcttcttgcatgcataaataatcgtaaaatgacaaataaaactaacaaagtaattaacaaatacaagcaatgaatattgatcatg |
10886427 |
T |
|
| Q |
292 |
atgataactacaagattatttatctcgcacttgtggtatctacatataacatatgtacaactcatgaagcaactttggtgacatctttatttgatctgtt |
391 |
Q |
| |
|
||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886428 |
atggtaagtacaagattatttatctcgcacttgtggtatctacatataacctatgtacaactcatgaagcaactttggtgacatctttatttgatctgtt |
10886527 |
T |
|
| Q |
392 |
gtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagtttc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10886528 |
gtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgc |
10886627 |
T |
|
| Q |
492 |
atggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtcc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10886628 |
ctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcctactgtac |
10886727 |
T |
|
| Q |
592 |
ccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagc |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886728 |
ccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagc |
10886827 |
T |
|
| Q |
692 |
aggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaaaccaccaagagcaccagccatggctgaacccgtaaggttt |
791 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
10886828 |
aggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcgttaaagccgccaagtgcaccagccatggctgaaccggtaaggttt |
10886927 |
T |
|
| Q |
792 |
tttagcatgttaagct |
807 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10886928 |
tttagcatgttaagct |
10886943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 352 - 807
Target Start/End: Original strand, 10872431 - 10872886
Alignment:
| Q |
352 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872431 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10872530 |
T |
|
| Q |
452 |
tcctgcaaggactgaaccagctactatagttgccagtttcatggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872531 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10872630 |
T |
|
| Q |
552 |
gctgattgcgacgcaagttgtgtgccccctcctactgtccccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggctt |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10872631 |
gctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggctt |
10872730 |
T |
|
| Q |
652 |
ccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaa |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10872731 |
ccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattaaa |
10872830 |
T |
|
| Q |
752 |
accaccaagagcaccagccatggctgaacccgtaaggttttttagcatgttaagct |
807 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10872831 |
gccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagct |
10872886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 352 - 807
Target Start/End: Original strand, 10877502 - 10877957
Alignment:
| Q |
352 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877502 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10877601 |
T |
|
| Q |
452 |
tcctgcaaggactgaaccagctactatagttgccagtttcatggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877602 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10877701 |
T |
|
| Q |
552 |
gctgattgcgacgcaagttgtgtgccccctcctactgtccccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggctt |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10877702 |
gctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggctt |
10877801 |
T |
|
| Q |
652 |
ccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaa |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10877802 |
ccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattaaa |
10877901 |
T |
|
| Q |
752 |
accaccaagagcaccagccatggctgaacccgtaaggttttttagcatgttaagct |
807 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10877902 |
gccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagct |
10877957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 352 - 807
Target Start/End: Original strand, 10882573 - 10883028
Alignment:
| Q |
352 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882573 |
ctcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgcccggctgcaattgcagacatgagtgagagctc |
10882672 |
T |
|
| Q |
452 |
tcctgcaaggactgaaccagctactatagttgccagtttcatggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
551 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882673 |
tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
10882772 |
T |
|
| Q |
552 |
gctgattgcgacgcaagttgtgtgccccctcctactgtccccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggctt |
651 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10882773 |
gctgattgcgacgcaagttgtgtgccccctcctactgtgcccacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggctt |
10882872 |
T |
|
| Q |
652 |
ccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaa |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10882873 |
ccatcatggtcatacagtgagaactttcaacattctgagcaggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattaaa |
10882972 |
T |
|
| Q |
752 |
accaccaagagcaccagccatggctgaacccgtaaggttttttagcatgttaagct |
807 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10882973 |
gccgccaagagcaccagccatggctgaaccggtaaggttttttagcatgttaagct |
10883028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 352 - 597
Target Start/End: Complemental strand, 39677575 - 39677330
Alignment:
| Q |
352 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
39677575 |
ctcatgaagcaactttggtgacatctttattagatctgttgtatttcatgtggcttttaacaagttgaccagctgcaattgcagacatgagtgaaagctc |
39677476 |
T |
|
| Q |
452 |
tcctgcaaggactgaaccagctactatagttgccagtttcatggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | | || |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
39677475 |
tcctgcaaggactgaaccagctactatagttgccaattgcctagagtttgctcctggactctctttactagctcccttaactccaagtaaattaagacaa |
39677376 |
T |
|
| Q |
552 |
gctgattgcgacgcaagttgtgtgccccctcctactgtccccacct |
597 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
39677375 |
gctgattgagatgcaagttgtgtaccccctccaactgtacccacct |
39677330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 594 - 807
Target Start/End: Complemental strand, 10047387 - 10047174
Alignment:
| Q |
594 |
acctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcag |
693 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| || || |||||||| |||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10047387 |
acctcaatggaaggcatagtaacagagatgtgaaggtctttgccatcattcacagcttccatcatggtcatacattgagaactctcaacattctgagcag |
10047288 |
T |
|
| Q |
694 |
gatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaaaccaccaagagcaccagccatggctgaacccgtaaggttttt |
793 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
10047287 |
gatcttgacctgtagccaagtaaatagcagaaacaatattactagcatgtgcattgaatccaccaagagcaccagccatggctgaaccagtaagattttt |
10047188 |
T |
|
| Q |
794 |
tagcatgttaagct |
807 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
10047187 |
taacatgttaagct |
10047174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 594 - 807
Target Start/End: Complemental strand, 39677182 - 39676969
Alignment:
| Q |
594 |
acctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcag |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| |||||||| |||||||| ||||||| |
|
|
| T |
39677182 |
acctcaatggaaggcatagtgactgagatatgaaggtccttgccatcattaacagcttccatcatggtcatacaatgagaactctcaacattttgagcag |
39677083 |
T |
|
| Q |
694 |
gatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaaaccaccaagagcaccagccatggctgaacccgtaaggttttt |
793 |
Q |
| |
|
||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
39677082 |
gatcttgacctgttgccaagtaaactgctgaaacaatattactagcatgtgcattgaagccaccaagagcaccagccatggctgaaccagtaagattttt |
39676983 |
T |
|
| Q |
794 |
tagcatgttaagct |
807 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39676982 |
aagcatgttaagct |
39676969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 352 - 597
Target Start/End: Complemental strand, 10048529 - 10048284
Alignment:
| Q |
352 |
ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc |
451 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||| || |
|
|
| T |
10048529 |
ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagttc |
10048430 |
T |
|
| Q |
452 |
tcctgcaaggactgaaccagctactatagttgccagtttcatggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaa |
551 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||| || | | ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |||| |
|
|
| T |
10048429 |
tcctgcaagaactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttctttactagcacccttaacaccaagtaaattcaaacaa |
10048330 |
T |
|
| Q |
552 |
gctgattgcgacgcaagttgtgtgccccctcctactgtccccacct |
597 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| ||||| ||||||| |
|
|
| T |
10048329 |
gctgattgtgatgcaagctgtgtgcctcctccaactgtacccacct |
10048284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 10868228 - 10868116
Alignment:
| Q |
74 |
tggttatgaaaaatttctacacttcaatttctacatcgagataattgtatcatttcaaatttaaatagaacattaattattattttgaaaataactcttt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10868228 |
tggttatgaaaaatttctacacttcaatttcaacatcgagataattgtatcatttcaaatttaaatagaacattaattattattttgaaaataactcttt |
10868129 |
T |
|
| Q |
174 |
ttgatatttattg |
186 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10868128 |
ttgatatttattg |
10868116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 10886141 - 10886253
Alignment:
| Q |
74 |
tggttatgaaaaatttctacacttcaatttctacatcgagataattgtatcatttcaaatttaaatagaacattaattattattttgaaaataactcttt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
10886141 |
tggttatgaaaaatttctacacttcaatttctacatcgagataattgtatcatttcaaatttaaatagaacgttaattattattttgaaaataactcttt |
10886240 |
T |
|
| Q |
174 |
ttgatatttattg |
186 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10886241 |
ttgatatttattg |
10886253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 593 - 807
Target Start/End: Complemental strand, 37950441 - 37950227
Alignment:
| Q |
593 |
cacctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagca |
692 |
Q |
| |
|
|||||||||||| ||||| || ||||| ||||||||||| | || ||||| |||||||||||||| || || || || |||||||||||||| ||||| |
|
|
| T |
37950441 |
cacctcaatggatggcattgtcactgaaatatgaaggtctctcccatcatttacggcttccatcattgttatgcaatgggaactttcaacattttgagct |
37950342 |
T |
|
| Q |
693 |
ggatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaaaccaccaagagcaccagccatggctgaacccgtaaggtttt |
792 |
Q |
| |
|
|||||||| || || || | |||| ||||||||||| ||||||||||| |||||||| |||||||||| ||||| | || ||||| | |||||||| |
|
|
| T |
37950341 |
ggatcttgaccagtggctataaaaatggcagaaacaatgttactagcatgggcattgaatccaccaagagtgccagcaacagcagaaccagcaaggtttt |
37950242 |
T |
|
| Q |
793 |
ttagcatgttaagct |
807 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
37950241 |
tgagcatgtttagct |
37950227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 10886049 - 10886108
Alignment:
| Q |
14 |
cagagatacaagttacaatgatagatacaatgaacgcaaaaagtgtaactaagaaaagta |
73 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886049 |
cagagatacaagttacaatgatagatacaatgaacgcaaaaagtgtaactaagaaaagta |
10886108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 10868320 - 10868261
Alignment:
| Q |
14 |
cagagatacaagttacaatgatagatacaatgaacgcaaaaagtgtaactaagaaaagta |
73 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10868320 |
cagagaaacaagttaaaatgatagatacaatgaacgcaaaaagtgtaaagaagaaaagta |
10868261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 37950744 - 37950688
Alignment:
| Q |
383 |
tgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacat |
439 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| | ||||| |||||||| |
|
|
| T |
37950744 |
tgatctgttgtatttcatgtggcttttgactagttgccctgaagcaatggcagacat |
37950688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 594 - 807
Target Start/End: Original strand, 30707963 - 30708176
Alignment:
| Q |
594 |
acctcaatggaaggcatagtgactgagatatgaaggtcctttccgtcattcacggcttccatcatggtcatacagtgagaactttcaacattctgagcag |
693 |
Q |
| |
|
||||||||||||||||| ||||| || || ||||||||||| || |||||||| |||||||||||||| ||||| |||||||| || ||||||||||||| |
|
|
| T |
30707963 |
acctcaatggaaggcatggtgacagaaatgtgaaggtccttgccatcattcacagcttccatcatggtaatacaatgagaactctccacattctgagcag |
30708062 |
T |
|
| Q |
694 |
gatcttgtcctgtagccaagtaaattgcagaaacaatattactagcatgtgcattgaaaccaccaagagcaccagccatggctgaacccgtaaggttttt |
793 |
Q |
| |
|
||||||| || || || | ||| | ||||| ||||| || |||||||| |||||||| ||||||||||||||||| | |||||| || || ||||| || |
|
|
| T |
30708063 |
gatcttgaccagtggctatgtagacagcagagacaatgttgctagcatgagcattgaacccaccaagagcaccagcaagggctgatccagttaggttctt |
30708162 |
T |
|
| Q |
794 |
tagcatgttaagct |
807 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30708163 |
aagcatgttaagct |
30708176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 384 - 583
Target Start/End: Original strand, 30707493 - 30707692
Alignment:
| Q |
384 |
gatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttg |
483 |
Q |
| |
|
|||||||| ||||||||||| || ||||| ||||| || ||||||||||||||||||||||| ||||| || ||||| || ||||||||||| || || | |
|
|
| T |
30707493 |
gatctgttatatttcatgtgactcttaactagttgtccagctgcaattgcagacatgagtgatagctcgccggcaagtaccgaaccagctacgatggtgg |
30707592 |
T |
|
| Q |
484 |
ccagtttcatggaatttgctcctggagtctctttactagctcctttaacaccaagtaaatttagacaagctgattgcgacgcaagttgtgtgccccctcc |
583 |
Q |
| |
|
||| | | | | |||||| ||||||| ||| | | || || ||||||||||||||||| ||||||||||| || || ||||||||||| |||||||| |
|
|
| T |
30707593 |
ccaatagcctagcatttgcacctggagattctgtgttggcgcccttaacaccaagtaaattaagacaagctgactgagatgcaagttgtgttccccctcc |
30707692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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