View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8957_low_15 (Length: 640)
Name: NF8957_low_15
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Original strand, 10571149 - 10571577
Alignment:
| Q |
19 |
tacatcagtgtaaatacgaaaactagttgagaatgtgaccatcttaactaaaatatcgacaacttcattggttgtcttttaataaactcaacatctgagt |
118 |
Q |
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| T |
10571149 |
tacattagtgtaaatacgaaaactagttgagaatgtgactatcttaactaaaatatggacaacttcattggttgtcttttaataaactcaacatctgagt |
10571248 |
T |
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| Q |
119 |
ttgaagaagnnnnnnnn-gtaatatgaatctttcaacaatcttggatgatagtgccataatttcaatgaaactctcctatgttagggaacttagacacta |
217 |
Q |
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| T |
10571249 |
ttgaagaagaaaaaaaaagtaatatgaatctttcaacaatctcagatgatagtgccataatttcaatgaaactctcctatgttagggaacttagacacta |
10571348 |
T |
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| Q |
218 |
cattcctcaaatccaattcaaagcctacattaattagctagaactctcgagttcaacacatggtagataacgggtcaagagcttcccatgtatctacctc |
317 |
Q |
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| T |
10571349 |
cattcctcaaatccaattcaaagcctacattaattagctagaactctcgagttcaacgcatggcagataacgggccaagagcttcccatgtatctacctc |
10571448 |
T |
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| Q |
318 |
cattagtagcaaaaaatattctgacttggcaagtgcaaagctttcgttatcatctcagttagggaaaaaagacatttatattgaacttatacctggcatg |
417 |
Q |
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| T |
10571449 |
cattagtagcaaaaaatattctgacttggcaagtgcaaagctttcgttatcatctcagttagggaaaagaggcatttatattgaacttatacctgccatg |
10571548 |
T |
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| Q |
418 |
atgggttgttgccagactctgccatccac |
446 |
Q |
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| T |
10571549 |
atgggttgttgcctgactctgccatccac |
10571577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 457 - 626
Target Start/End: Original strand, 10572225 - 10572395
Alignment:
| Q |
457 |
attgcctattaaagagccattttcagccagaattattcattatgaattttgacttcgtgtgtatgttcacnnnnnnnn-ctttgatggtgtatttatatt |
555 |
Q |
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| T |
10572225 |
attgcttatttaagagccattttcagccagaattattcattatgaattttgacttcgtgtgtatgttcactttttttttctttgatggtgtatttatatt |
10572324 |
T |
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| Q |
556 |
atgatttcaagatgaatctcttgcgatgtgtttgaaacgtgtgatctaattttccttttattgatgcaatt |
626 |
Q |
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| T |
10572325 |
atgatttcaagatgaatctcttgcgatgtgtttgaaacatgtgatttgattttccttttattgatgcaatt |
10572395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 414 - 446
Target Start/End: Original strand, 10571592 - 10571624
Alignment:
| Q |
414 |
catgatgggttgttgccagactctgccatccac |
446 |
Q |
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| T |
10571592 |
catgatgggttgttgccagagtctgccatccac |
10571624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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