View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8957_low_18 (Length: 595)
Name: NF8957_low_18
Description: NF8957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8957_low_18 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 11 - 595
Target Start/End: Complemental strand, 3568979 - 3568395
Alignment:
| Q |
11 |
acctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaaca |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568979 |
acctgtgttactattatgaactatatcatctgccaaaaaaccaggttgaaccgcaagcatgctactatcttcagacatgacggtacctgaattaccaaca |
3568880 |
T |
|
| Q |
111 |
agttccatgtcatgttggatgttaggatgtatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568879 |
agttccatgtcatgttggatgttaggatatatatccttgttagaaccaatctcatgaatgttactgttgcttaaagatttgccatagagatatctgaatg |
3568780 |
T |
|
| Q |
211 |
ggcagcatcctcacgtgcaaccagctgttgctcctcactgtgcacgccctcataatctaaatgtgctatgttggccgagttagcaagatcattctgctga |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568779 |
ggcagcatcctcacgtgcaaccagctgttgctcctcactgtgcacgccctcataatccaaatgtgctatgttggccgagttagcaagatcattctgctga |
3568680 |
T |
|
| Q |
311 |
tgcgccaatgtgggtgaggagccagaagggcgtattccttcaatcgtgtggtctatgcacacttcctcttgggagaaatgttggaccagcaaaggagatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568679 |
tgcgccaatgtgggtgaggagccagaagggcgtattccttcaatcatgtggtctatgcacacttcctcttgggagaaatgttggaccagcaaaggagatt |
3568580 |
T |
|
| Q |
411 |
gctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaacttgaaaccgacgcagctgcaaccgaaaaaggaac |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3568579 |
cctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaacttgaaacggacgcagctgcaaccgaaaaaggaac |
3568480 |
T |
|
| Q |
511 |
atgcaagttcgtgttttctggctgcgtttgctccatttgaagaacttgcatgtcatcttgctcaacatcagtggccaactccaaa |
595 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568479 |
atgcgagttcgtgttttctggctgcgtttgctccatttgaagaacttgcatgtcatcttgctcaacatcagtggccaactccaaa |
3568395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 18485357 - 18485273
Alignment:
| Q |
7 |
cagaacctgtgttactataatgaactatatcatctgccaaaaaatcaggttgaaccgcaagcatgctactatcttcagacatgac |
91 |
Q |
| |
|
|||||||| |||||| || | |||||| ||||||||||||||| | |||||||| ||||||||||| ||||||||||||| |
|
|
| T |
18485357 |
cagaacctatgttaccattaagaactaccgcatctgccaaaaaattaaactgaaccgcgagcatgctactgccttcagacatgac |
18485273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University